Deconstructing the GWAS library - Next Generation GWAS.

Journal: Physiological reviews
Published Date:

Abstract

Genome-wide association studies (GWAS) have identified numerous common genetic variants associated with cardiovascular traits and diseases. These studies have increased our understanding of the genetic architecture of cardiac diseases and have facilitated the identification of genetic risk factors in patients. Furthermore, they have spurred the development of novel effective therapies by targeting the causal disease pathways. Despite the demonstrated clinical utility of GWAS, the mechanism of action of many of these variants remains unstudied, and this has hindered the full potential of GWAS. Various high-throughput screening and machine-learning technologies have been developed to assist with predicting and prioritizing pathogenic variants for experimental validation. These technologies can potentially unravel novel pathways in disease pathogenesis and accelerate the development of new therapies. In this review, we provide an overview of the various GWAS performed in heart disease and describe the various methods employed to prioritize disease-relevant variants from these studies, including bioinformatic and experimental approaches. We highlight relevant examples that have applied these tools to identify the specific variants in each identified locus and how some of these variants have spurred novel therapies. Finally, we discuss the outstanding challenges facing research in this field and how they can be addressed.

Authors

  • Weirui Zhang
    Cardiovascular Research Institute, National University Health System, Singapore.
  • Svenja Koslowski
    Department of Medicine, Université de Montreal, Quebec, Canada.
  • Marouane Benzaki
    Department of Medicine, Université de Montreal, Quebec, Canada.
  • Chang Jie Mick Lee
    Cardiovascular Metabolic Disease Translational Research Programme, National University of Singapore, Yong Loo Lin School of Medicine, Centre for Translational Medicine, Singapore (C.J.M.L., R.S.-Y.F.).
  • Yike Zhu
    Cardiovascular Research Institute, National University Health System, Singapore.
  • Michelle C E Mak
    Cardiovascular Research Institute, National University Health System, Singapore.
  • Yonglin Zhu
    Center for Stem Cell Biology and Regenerative Medicine, School of Medicine, Tsinghua University, Beijing 100084, China.
  • Shaun S E Loong
    Cardiovascular Research Institute, National University Health System, Singapore.
  • Guillaume Lettre
    Department of Medicine, Université de Montreal, Quebec, Canada.
  • Chukwuemeka George Anene-Nzelu
    Cardiovascular Research Institute, National University Health System, Singapore.
  • Roger Foo
    Cardiovascular Research Institute, National University Health System, Singapore.

Keywords

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