Making decisions in complex, real-world environments is challenging. Biologically plausible strategies like reinforcement learning (RL) require attention toward reward-predictive stimuli to define task states, yet how attention and decision processes... read more
Accurate gene annotation is crucial for inference of biological knowledge from genomes. However, non-canonical genes such as orphan or single-exon genes as well as those residing in rapidly evolving regions are routinely dismissed in annotation pipel... read more
The rapid growth of molecular foundation models and general-purpose large language models has encouraged a scale-centric view of artificial intelligence in drug discovery, in which larger pretrained models are expected to supersede compact cheminform... read more
T-cell receptor (TCR) repertoires encode the organization of adaptive immunity and its reshaping by cancer and therapy, but disentangling treatment-associated structure from V(D)J recombination constraints remains challenging. We present CRAFT (Cance... read more
Learning from mistakes is fundamental for survival. Humans can monitor their behavior to detect action errors without external feedback, utilizing error information for adaptation and learning. How such errors are detected remains unknown. We investi... read more
Mechanistically predicting the consequences of drug action requires distinguishing whether molecular interactions are activating or inhibitory, yet most biomedical knowledge graphs and graph neural networks represent biology as unsigned associations.... read more
Ovarian cancer is one of the gynecological cancer types, which, if metastasized and not detected early, can cause deaths among women. Therefore, there is a need to accurately predict drug responses to ovarian cancer. A gynecological pathologist inspe... read more
The incidence of the vast majority of neurodegenerative, cancer, and metabolic diseases generally increases exponentially with age. In large-scale biobanks, linking time-to-diagnosis information in electronic health records to multiple genomic (``mul... read more
Excessive alcohol consumption remains a major public health challenge with limited therapeutic options. Both glucagon-like peptide-1 (GLP-1) and fibroblast growth factor-21 (FGF21) independently regulate alcohol intake through complementary metabolic... read more
High-throughput accurate protein-protein interaction (PPI) prediction is foundational to systems-level biological understanding, disease mechanism dissection, and structure-based drug discovery. Traditional graph convolutional networks (GCNs) are lim... read more
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