Predicting the clinical significance of genetic variants remains a central challenge in genomic medicine, with most observed variants classified as variants of uncertain significance. Here we show that representations from Evo~2, a 7-billion-paramete... read more
Engineering small-molecule binding proteins de novo remains a significant challenge as even advanced generative models struggle to model the atom-level details of protein-ligand interactions with sufficient accuracy. Higher experimental success rates... read more
Probe design for fluorescence in situ hybridization (FISH) underpins spatial transcriptomics, three-dimensional genome studies, and clinical diagnostics, yet remains constrained by two challenges: dependence on expert knowledge for parameter selectio... read more
Biomedical discovery is hindered by fragmented, modality-specific repositories and uneven metadata, limiting integrative analysis, accessibility, and reproducibility. To address these challenges, we present CROssBARv2, a provenance-rich biomedical da... read more
Inconsistent and unstructured metadata in public biomedical repositories, such as the Gene Expression Omnibus (GEO), severely limits data discoverability and research reproducibility. To address this, we introduce MetaMuse, a modular, multi-agent art... read more
Quantitative molecular imaging in photoacoustics is fundamentally limited by the ill-posed nature of spectral unmixing, where spectral overlap, noise, and unknown fluence introduce bias in conventional inversion-based methods. We introduce photoacous... read more
Artificial intelligence (AI) is reshaping proteomics workflows, delivering remarkable gains in both peptide identification sensitivity and quantitative performance. However, the potential of deep learning models in proteomics has not been fully explo... read more
Lung transplantation programs must decide when bilateral lung transplantation (BLT) offers meaningful functional benefit over single lung transplantation (SLT). Because donor and recipient characteristics jointly shape outcomes, the BLT-SLT contrast ... read more
Quantitative analysis of animal behavior is fundamental to neuroscience and ethology but remains constrained by the scalability, subjectivity, and limited reproducibility of manual annotation. Most automated approaches infer behavior through predefin... read more
Background: Datasets related to infectious diseases are essential for public health decision-making, yet their reuse remains limited by persistent barriers to data sharing and integration. Achieving data that are Findable, Accessible, Interoperable, ... read more
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