Nanopore sequencing provides long and ultra-long reads that are valuable for structural variation (SV) detection and genome assembly. However, false-positive chimeric reads can arise and interfere with somatic SV calling. Here, we show that ligation-... read more
Neutrophil-mediated persistent inflammation and neutrophil extracellular trap formation (NETosis) are critical in the pathogenesis of deep vein thrombosis (DVT). Identifying the mechanisms controlling these proinflammatory and prothrombotic functions... read more
Gene networks (GNs) encode diverse molecular relationships and are central to interpreting cellular function and disease. The heterogeneity of interaction types has led to computational methods specialized for particular network contexts. Large langu... read more
Modeling individual brain dynamics from resting-state fMRI (rs-fMRI) remains challenging due to substantial inter-subject variability, measurement noise, and limited data length per subject. Here, we systematically evaluate a hierarchical dynamical s... read more
Background: Accumulating evidence indicates that moderate exercise may reduce the incidence of Stanford type A aortic dissection (TAAD), but the specific mechanisms remain unclear. This study aims to identify exercise-related biomarkers in TAAD patie... read more
Antimicrobial peptides (AMPs) are key effectors of host defence, however, their functional deployment across renal tissue and urine in pyelonephritis (PN) remains incompletely understood. Here, we integrate kidney and urine proteomics with urinary pe... read more
Mutation-induced drug resistance is a major contributor to the failure of targeted cancer therapies, particularly in tumors driven by mutations in the KRAS oncogene. Although covalent inhibitors effectively target KRAS G12C, secondary mutations such ... read more
Proteins are fundamental macromolecules involved in virtually all biological processes. Their physiological roles are tightly linked to their three-dimensional structure, which can be naturally abstracted as Protein Contact Networks (PCNs), i.e., gra... read more
Despite significant neurobiological and pathological overlaps, Alzheimer's (AD) and Parkinson's (PD)-the primary threats to healthy aging-are still managed as distinct clinical entities. Standard machine learning exacerbates this fragmentation by pri... read more
The classification of pediatric brain tumors is investigated using deep learning on hematoxylin and eosin (H&E) and antigen Ki-67 (Ki-67) whole slide images (WSIs) from the Children's Brain Tumor Network (CBTN) dataset. A total of 1,662 unregistered ... read more
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