Artificial intelligence (AI) models have advanced rapidly, driving breakthroughs in protein structure prediction, functional annotation, and conformational exploration. Among these, molecular dynamics (MD)-inspired generative models such as AlphaFlow... read more
The spatiotemporal progression of tau aggregates in neurodegenerative diseases like Alzheimer's follows the brain's structural connectome, yet a profound gap exists between the slow macroscopic spread observed over years and the rapid protein kinetic... read more
Accurate prediction of mutational dependencies to model tumor evolution can improve our understanding of cancer progression and is crucial for early diagnosis and interventions. This is especially true in colorectal tumorigenesis which often follows ... read more
Background: We previously published a literature based pipeline for sepsis gene prioritization (PS3 and candidate genes) using an LLM enabled retrieval and judging framework. Here, we extend that work to ask whether these prioritized genes show indep... read more
Oxygen is a primary driver of the distribution and activity of microbial life. Since oxygen levels are often difficult to measure in situ, one potential solution is to use bacteria as bioindicators of oxygen levels. As bacteria range from obligate ae... read more
Accurate, efficient and autonomous particle picking is a major bottleneck in high-resolution cryo-electron microscopy (cryo-EM). We introduce PartiNet, an Artificial Intelligence (AI)-based particle picker with size-agnostic detection and pre-trained... read more
Deep learning has transformed protein structure prediction; however, most systems predominantly return a single dominant conformation with limited control over alternative states. We introduce Boltz-sample as a systematic steering strategy for Boltz-... read more
Human protein kinases constitute a large superfamily of about 500 genes, historically classified into subfamilies based on phylogenetic relationship. However, many kinases remain unclassified. Phylogeny is typically based on multiple sequence alignme... read more
PURPOSE: Some patients with drug-induced liver injury (DILI) would progress into chronicity or lethal. Although adipocyte fatty acid-binding protein (AFABP) is essential in liver diseases, its role in DILI is unknown. We aimed to investigate their as... read more
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