Automated Bi-Ventricular Segmentation and Regional Cardiac Wall Motion Analysis for Rat Models of Pulmonary Hypertension.

Journal: Pulmonary circulation
Published Date:

Abstract

Artificial intelligence-based cardiac motion mapping offers predictive insights into pulmonary hypertension (PH) disease progression and its impact on the heart. We proposed an automated deep learning pipeline for bi-ventricular segmentation and 3D wall motion analysis in PH rodent models for bridging the clinical developments. A data set of 163 short-axis cine cardiac magnetic resonance scans were collected longitudinally from monocrotaline (MCT) and Sugen-hypoxia (SuHx) PH rats and used for training a fully convolutional network for automated segmentation. The model produced an accurate annotation in < 1 s for each scan (Dice metric > 0.92). High-resolution atlas fitting was performed to produce 3D cardiac mesh models and calculate the regional wall motion between end-diastole and end-systole. Prominent right ventricular hypokinesia was observed in PH rats (-37.7% ± 12.2 MCT; -38.6% ± 6.9 SuHx) compared to healthy controls, attributed primarily to the loss in basal longitudinal and apical radial motion. This automated bi-ventricular rat-specific pipeline provided an efficient and novel translational tool for rodent studies in alignment with clinical cardiac imaging AI developments.

Authors

  • Marili Niglas
    National Heart and Lung Institute Imperial College London London UK.
  • Nicoleta Baxan
    National Heart and Lung Institute Imperial College London London UK.
  • Ali Ashek
    National Heart and Lung Institute Imperial College London London UK.
  • Lin Zhao
    c Key Laboratory of Birth Defects and Related Diseases of Women and Children (Ministry of Education) , West China Second University Hospital Sichuan University , Chengdu , China.
  • Jinming Duan
    School of Computer Science University of Birmingham Birmingham UK.
  • Declan O'Regan
    MRC London Institute of Medical Sciences Imperial College London London UK.
  • Timothy J W Dawes
    MRC London Institute of Medical Sciences, Imperial College London, London, United Kingdom.
  • Chen Nien-Chen
    National Heart and Lung Institute Imperial College London London UK.
  • Chongyang Xie
    National Heart and Lung Institute Imperial College London London UK.
  • Wenjia Bai
    Department of Computing Imperial College London London UK.
  • Lan Zhao
    National Heart and Lung Institute Imperial College London London UK.

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