Pan-cancer Analyses Refine the Single-Cell Portrait of Tumor-Infiltrating Dendritic Cells.

Journal: Cancer research
Published Date:

Abstract

Dendritic cells (DCs) are pivotal orchestrators of anti-tumor immunity. DC-based anti-tumor treatments are being actively developed, but effective clinical responses have not yet been achieved. Further exploration of DC heterogeneity in the tumor microenvironment (TME) and across cancer types could provide insights for developing DC-based immunotherapies. Here, we integrated single-cell RNA sequencing data of DCs from over 2,500 samples across 33 cancer types and established a comprehensive blueprint of human DCs. Several rare subsets of DCs infiltrated the tumors, including AXL+SIGLEC6+ (AS) DCs and Langerhans cell (LC)-like DCs, and displayed functional potentials marked with distinct transcriptomic characteristics. Computational analyses demonstrated that the LC-like subset could be an additional cellular origin of tumor-enriched LAMP3+ DCs and that distinct cellular origins are associated with the pleiotropic functional potentials of LAMP3+ DCs. Furthermore, this DC atlas enabled development of a machine learning model to guide DC annotation for subsequent single-cell analysis and prioritization of a valuable target for enhancing anti-tumor DC vaccination. This integrative resource provides a panoramic view to unravel the complexity of tumor-infiltrating DCs and offers valuable insights for developing therapies targeting DCs.

Authors

  • Tianyi Ma
    Nanjing MetaEntropy Intelligent Technology Co., Ltd., Nanjing 210030, China.
  • Xiaojing Chu
    Changping Laboratory, Beijing, Beijing, China.
  • Jinyu Wang
    Sichuan Provincial Center for Mental Health, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, Chengdu, 610072, China. wangjyd2003@163.com.
  • Xiangjie Li
    Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
  • Yu Zhang
    College of Marine Electrical Engineering, Dalian Maritime University, Dalian, China.
  • Dan Tong
    Department of Earth System Science, Tsinghua University, Beijing 100084, China.
  • Wenbin Xu
    Nanjing Huazhu Industrial Intelligent Equipment Co., Ltd., Nanjing 211175, China.
  • Guohui Dang
    Changping Laboratory, Beijing, Beijing, China.
  • Lu Qi
    Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
  • Yuhui Miao
    University of Science and Technology of China, Hefei, Anhui, China.
  • Zemin Zhang
  • Sijin Cheng
    Chongqing Medical University, Chongqing, China.

Keywords

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