M3DA: Benchmark for Unsupervised Domain Adaptation in 3D Medical Image Segmentation
Journal:
arXiv
Published Date:
Feb 24, 2025
Abstract
Domain shift presents a significant challenge in applying Deep Learning to
the segmentation of 3D medical images from sources like Magnetic Resonance
Imaging (MRI) and Computed Tomography (CT). Although numerous Domain Adaptation
methods have been developed to address this issue, they are often evaluated
under impractical data shift scenarios. Specifically, the medical imaging
datasets used are often either private, too small for robust training and
evaluation, or limited to single or synthetic tasks. To overcome these
limitations, we introduce a M3DA /"mEd@/ benchmark comprising four publicly
available, multiclass segmentation datasets. We have designed eight domain
pairs featuring diverse and practically relevant distribution shifts. These
include inter-modality shifts between MRI and CT and intra-modality shifts
among various MRI acquisition parameters, different CT radiation doses, and
presence/absence of contrast enhancement in images. Within the proposed
benchmark, we evaluate more than ten existing domain adaptation methods. Our
results show that none of them can consistently close the performance gap
between the domains. For instance, the most effective method reduces the
performance gap by about 62% across the tasks. This highlights the need for
developing novel domain adaptation algorithms to enhance the robustness and
scalability of deep learning models in medical imaging. We made our M3DA
benchmark publicly available: https://github.com/BorisShirokikh/M3DA.
