Long-Read epigenetic clocks identify improved brain aging predictions

Journal: bioRxiv
Published Date:

Abstract

Epigenetic clocks are widely used to estimate biological aging, yet most are built from array-based data from peripheral tissues of predominantly European-ancestry individuals, limiting generalizability. Here, we present aging clocks trained using GenoML, an automated machine learning platform for clinical and multiomics data, on DNA methylation from Oxford Nanopore long-read sequencing. These models leverage over 28 million CpG sites across individuals of African and European ancestry. Our findings highlight the power of long-read methylation data for constructing accurate, ancestry-aware aging clocks and emphasize the importance of inclusive training datasets.

Authors

  • Spencer M Grant; Mary B Makarious; Melissa Meredith; Abraham Moller; Melissa Grant-Peters; Amy Hicks; Ajeet Mandal; Pavan Auluck; Hampton Leonard; Nicole Kuznetsov; Cory Weller; Xylena Reed; Miten Jain; Luigi Ferrucci; Mark R. Cookson; Mina Ryten; Mike A. Nalls; Kimberley J. Billingsley