Deconvolution improves cryo-EM maps

Journal: bioRxiv
Published Date:

Abstract

With technological advancements in recent years, single particle cryogenic electron microscopy (cryo-EM) has become a major methodology for structural biology. Structure determination by single particle cryo-EM is premised on randomly orientated particles embedded in a thin layer of vitreous ice to resolve high-resolution structural information in all directions. In practice, preferentially distributed particle orientations and/or other imperfections in imaging and data processing deteriorate quality of obtained cryo-EM map. Here we present a deconvolution approach, named AR-Decon, that computationally improves the quality of cryo-EM maps. We tested and validated the procedure, compared its performance with that of machine learning based density modification method, and benchmarked its performance with a wide range of deposited maps. Our results show that AR-Decon is robust and is a generally applicable post-processing procedure for single particle cryo-EM.

Authors

  • Li
  • J.; Choi
  • W.; chen
  • Y.; Zheng
  • S.; McDonald
  • A.; Sedat
  • J. W.; Agard
  • D. A.; Cheng
  • Y.

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