Adaptive Region-Specific Loss for Improved Medical Image Segmentation.

Journal: IEEE transactions on pattern analysis and machine intelligence
Published Date:

Abstract

Defining the loss function is an important part of neural network design and critically determines the success of deep learning modeling. A significant shortcoming of the conventional loss functions is that they weight all regions in the input image volume equally, despite the fact that the system is known to be heterogeneous (i.e., some regions can achieve high prediction performance more easily than others). Here, we introduce a region-specific loss to lift the implicit assumption of homogeneous weighting for better learning. We divide the entire volume into multiple sub-regions, each with an individualized loss constructed for optimal local performance. Effectively, this scheme imposes higher weightings on the sub-regions that are more difficult to segment, and vice versa. Furthermore, the regional false positive and false negative errors are computed for each input image during a training step and the regional penalty is adjusted accordingly to enhance the overall accuracy of the prediction. Using different public and in-house medical image datasets, we demonstrate that the proposed regionally adaptive loss paradigm outperforms conventional methods in the multi-organ segmentations, without any modification to the neural network architecture or additional data preparation.

Authors

  • Yizheng Chen
    Department of Radiation Oncology, Stanford University, Stanford, 94305, USA.
  • Lequan Yu
  • Jen-Yeu Wang
    Department of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Stanford, CA, 94305, USA.
  • Neil Panjwani
    Department of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Stanford, CA, 94305, USA.
  • Jean-Pierre Obeid
  • Wu Liu
    Beijing Key Laboratory of Intelligent Telecommunication Software and Multimedia, Beijing University of Posts and Telecommunications, Beijing, 100876, China. liuwu@bupt.edu.cn.
  • Lianli Liu
    Department of Radiation Oncology, Stanford University, Palo Alto, California, USA.
  • Nataliya Kovalchuk
    Department of Radiation Oncology, Stanford University, 875 Blake Wilbur Drive, Stanford, CA, 94305-5847, USA.
  • Michael Francis Gensheimer
  • Lucas Kas Vitzthum
  • Beth M Beadle
    Department of Radiation Oncology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
  • Daniel T Chang
    Department of Radiation Oncology, School of Medicine, Stanford University, Stanford, California 94305.
  • Quynh-Thu Le
    Department of Radiation Oncology, Stanford University School of Medicine , Stanford, California 94305, United States.
  • Bin Han
    2 Department of Radiation Oncology, Stanford University, Stanford, CA, USA.
  • Lei Xing
    Department of Radiation Oncology, Stanford University, CA, USA.