Computational methods for prediction of in vitro effects of new chemical structures.

Journal: Journal of cheminformatics
Published Date:

Abstract

BACKGROUND: With a constant increase in the number of new chemicals synthesized every year, it becomes important to employ the most reliable and fast in silico screening methods to predict their safety and activity profiles. In recent years, in silico prediction methods received great attention in an attempt to reduce animal experiments for the evaluation of various toxicological endpoints, complementing the theme of replace, reduce and refine. Various computational approaches have been proposed for the prediction of compound toxicity ranging from quantitative structure activity relationship modeling to molecular similarity-based methods and machine learning. Within the "Toxicology in the 21st Century" screening initiative, a crowd-sourcing platform was established for the development and validation of computational models to predict the interference of chemical compounds with nuclear receptor and stress response pathways based on a training set containing more than 10,000 compounds tested in high-throughput screening assays.

Authors

  • Priyanka Banerjee
    Structural Bioinformatics Group, Institute for Physiology, Charité - University Medicine Berlin, Berlin, Germany ; Graduate School of Computational Systems Biology, Humboldt University of Berlin, Berlin, Germany.
  • Vishal B Siramshetty
    Structural Bioinformatics Group, Experimental and Clinical Research Center (ECRC), Charité - University Medicine Berlin, Berlin, Germany ; BB3R - Berlin Brandenburg 3R Graduate School, Free University of Berlin, Berlin, Germany.
  • Malgorzata N Drwal
    Structural Bioinformatics Group, Institute for Physiology, Charité - University Medicine Berlin, Berlin, Germany ; Laboratoire d'innovation thérapeutique, Université de Strasbourg, Illkirch, France.
  • Robert Preissner
    Structural Bioinformatics Group, Institute for Physiology, Charité - University Medicine Berlin, Berlin, Germany ; Structural Bioinformatics Group, Experimental and Clinical Research Center (ECRC), Charité - University Medicine Berlin, Berlin, Germany ; BB3R - Berlin Brandenburg 3R Graduate School, Free University of Berlin, Berlin, Germany.

Keywords

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