AIMC Journal:
bioRxiv

Showing 1461 to 1470 of 4956 articles

Deep analysis of FANTOM CAGE data reveals hierarchical patterns of TSS co-deployment hubs and their disruption in cancers

bioRxiv
Selective deployment of multiple transcription start sites is a major regulatory feature of human transcriptomes. FANTOM CAGE data exhibit a near-universal TSS deployment parsimony which is disrupted in cancers. We have recently shown that TSS deploy...

Evaluating open LLMs for agentic analysis orchestration in a typical biomedical lab

bioRxiv
Agentic tools - software environments where a large language model plans, calls external tools, executes code, and iterates with minimal human intervention - will run a substantial share of routine biomedical data analysis within the next few years. ...

EpiReasoner: An Integrated Artificial Intelligence Framework for Phenotype-to-Genotype Reasoning in Plant Epidermal Development

bioRxiv
Achieving high-throughput and precise phenotypic quantification and imaging modalities of stomatal and epidermal cells across diverse species remains a primary bottleneck in elucidating the mechanisms of stomatal dynamics, epidermal patterning, and e...

Prior scene context reshapes feature reliance during rapid perception

bioRxiv
Human perception is shaped by both sensory input and prior knowledge or expectations. But how does prior contextual information influence rapid visual processing? Here, we combined eye tracking with feature-based encoding models across two experiment...

Interpretable decoding of cell fate from a snapshot of combinatorial signaling

bioRxiv
How combinatorial cell signaling controls cellular decisions in the face of crosstalk is a fundamental problem in biology. A key open question is whether a single snapshot of signaling is sufficient to predict cell fate, especially given substantial ...

Ensemble Post-hoc Explainable AI for Multilead ECG: Identifying Disease-Relevant Features in Single-Lead Interpretations

bioRxiv
Despite the growing success of deep learning (DL) in multivariate time-series classification, such as 12-lead electrocardiography (ECG), widespread integration into clinical practice has yet to be achieved. The limited transparency of DL hinders clin...

Estimating Daily Taxon-specific Tree Pollen at a 1-km Resolution in Atlanta, GA from 2020 to 2024

bioRxiv
While tree pollen is a major trigger of allergic respiratory conditions and different taxa exhibit varying allergenic potentials, the lack of high-resolution, taxon-specific exposure metrics have limited our ability to identify which local pollen tax...

LeafyVGG-16: Transfer Learning for Plant Disease Detection with Cyber Risk Analysis

bioRxiv
Plant disease detection using deep learning is essential for precision agriculture, enabling early and automated crop health monitoring. This study proposes an end-to-end transfer learning pipeline, LeafyVGG-16, for multi-class classification of plan...

Integration of Morphometric and Machine Learning Approaches Strengthens Yield Prediction and Genetic Divergence Assessment in Annona reticulata under Semi-Arid Conditions.

bioRxiv
This study integrated morphometric characterization and machine-learning modelling to identify key predictors of yield in Annona reticulata under semi-arid conditions. Thirty-one canopy, fruit, seed, and biochemical traits were evaluated across 62 ge...

Predictive coding video models capture dorsal parietal representations and human judgments for surfaces defined by motion

bioRxiv
Stimulus-computable models have transformed our understanding of ventral visual processing, yet comparable progress in modeling the dorsal visual stream have lagged behind. Classical motion-energy models capture only local signals and fall short of r...