AIMC Journal:
bioRxiv

Showing 811 to 820 of 4938 articles

Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis

bioRxiv Jul 9, 2026
Cancer genomics and diagnostics is a rapidly evolving field in which identifying which topics attract early citation prominence can inform laboratory investment, clinical translation, and research strategy. We developed a bibliometric framework to id...
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BertST: BERT-based Spatial Domain Identification in Patient Data

bioRxiv Jul 9, 2026
Spatial transcriptomics enables the study of gene expression within its native tissue context, providing critical insights into cellular organization and microenvironment-driven biological processes. A key challenge in this field is spatial domain id...
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IgGM2: An All-Atom Foundation Model for Adaptive Immune Receptor Design

bioRxiv Jul 9, 2026
Accurate immune receptor design requires modeling the coupled variation of amino-acid sequence, full-atom conformation, and target-binding geometry across antibodies, nanobodies, and T-cell receptors (TCRs). Existing methods often address only part o...
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A five-dimensional functional state space for fingerprinting disease transcriptomes

bioRxiv Jul 9, 2026
High-throughput transcriptomics has transformed disease biology, but its outputs often remain fragmented into gene and pathway lists that are difficult to compare across conditions or use for human-AI interpretation. We developed a five-dimensional (...
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XIBBIT: A biometric recognition tool for efficient Xenopus laevis identification and colony management

bioRxiv Jul 9, 2026
The African clawed frog Xenopus laevis is a widely utilized model organism in biomedical research; however, significant challenges in experimental reproducibility and colony management remain. A major obstacle lies in the reliable identification of i...
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Fast and Accurate Photon-Transport Modeling based on Foundation-Model-Encoded Implicit Neural Surrogate towards Optimized Near-Infrared Brain Stimulation

bioRxiv Jul 9, 2026
Clinical treatment planning of near-infrared (NIR) brain stimulation requires patient-specific light dosimetry to optimize fluence delivery to cortical targets. The gold-standard Monte Carlo (MC) photon transport forward solver is accurate but comput...
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Generative AI Models Reveal Dynamic Views of Aging (DyViA) Phenotypes in Healthy Individuals

bioRxiv Jul 9, 2026
Background and objectives: In recent years, the need to develop analytical strategies for healthy aging has assumed great importance. In this study, we introduce DyViA, a generative artificial intelligence (genAI) platform that can construct personal...
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BCCWJ-Brain: A Multi-Modal fMRI, MEG, and EEG Dataset of Naturalistic Japanese Reading

bioRxiv Jul 9, 2026
We present the BCCWJ-Brain dataset, a multi-modal neuroimaging resource comprising functional magnetic resonance imaging (fMRI), magnetoencephalography (MEG), and electroencephalography (EEG) data recorded from native Japanese speakers reading newspa...
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A multiregional image-text dataset and benchmark for vision-language modeling of plant diseases

bioRxiv Jul 9, 2026
Plant diseases remain a major challenge to global food production, and timely, accurate, and scalable detection of plant stress is critical to reducing these losses. Recent advances in digital imaging and artificial intelligence offer unprecedented o...
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Biological Network Organization, Not Generic Graph Topology, Drives Graph-Based Gene Essentiality Prediction

bioRxiv Jul 9, 2026
Predicting gene essentiality across cellular contexts is a central challenge in computational biology, with implications for identifying cancer vulnerabilities. Graph neural networks (GNNs) integrate molecular interaction networks with gene-level fea...
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