Development of a method for estimating asari clam distribution by combining three-dimensional acoustic coring system and deep neural network.

Journal: Scientific reports
PMID:

Abstract

Developing non-contact, non-destructive monitoring methods for marine life is crucial for sustainable resource management. Recent monitoring technologies and machine learning analysis advancements have enhanced underwater image and acoustic data acquisition. Systems to obtain 3D acoustic data from beneath the seafloor are being developed; however, manual analysis of large 3D datasets is challenging. Therefore, an automatic method for analyzing benthic resource distribution is needed. This study developed a system to estimate benthic resource distribution non-destructively by combining high-precision habitat data acquisition using high-frequency ultrasonic waves and prediction models based on a 3D convolutional neural network (3D-CNN). The system estimated the distribution of asari clams (Ruditapes philippinarum) in Lake Hamana, Japan. Clam presence and count were successfully estimated in a voxel with an ROC-AUC of 0.9 and a macro-average ROC-AUC of 0.8, respectively. This system visualized clam distribution and estimated numbers, demonstrating its effectiveness for quantifying marine resources beneath the seafloor.

Authors

  • Tokimu Kadoi
    Graduate School of Medical Life Science, Yokohama City University, Kanagawa, Japan.
  • Katsunori Mizuno
    Department of Environment Systems, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan. kmizuno@edu.k.u-tokyo.ac.jp.
  • Shoichi Ishida
    Graduate School of Medical Life Science, Yokohama City University, Yokohama, Kanagawa 230-0045, Japan.
  • Shogo Onozato
    Department of Environment Systems, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.
  • Hirofumi Washiyama
    Shizuoka Prefectural Research Institute of Fishery and Ocean, 5005-3, Bentenjima, Maisaka-cho, Chūō-ku, Hamamatsu-shi, Shizuoka, 431-0214, Japan.
  • Yohei Uehara
    Shizuoka Prefectural Research Institute of Fishery and Ocean, 5005-3, Bentenjima, Maisaka-cho, Chūō-ku, Hamamatsu-shi, Shizuoka, 431-0214, Japan.
  • Yoshimoto Saito
    Marine Open Innovation Institute, 2nd Floor, Shimizu Marine Building, 9-25, Hinode-cho, Shimizu-ku, Shizuoka-shi, Shizuoka, 424-0922, Japan.
  • Kazutoshi Okamoto
    Marine Open Innovation Institute, 2nd Floor, Shimizu Marine Building, 9-25, Hinode-cho, Shimizu-ku, Shizuoka-shi, Shizuoka, 424-0922, Japan.
  • Shingo Sakamoto
    Windy Network Corporation, 1-19-4, Higashi-Hongo, Shimoda-shi, Shizuoka, 415-0035, Japan.
  • Yusuke Sugimoto
    Windy Network Corporation, 1-19-4, Higashi-Hongo, Shimoda-shi, Shizuoka, 415-0035, Japan.
  • Kei Terayama
    Graduate School of Medical Life Science, Yokohama City University, Yokohama, Kanagawa 230-0045, Japan.