Rapid Deployment of Antiviral Drugs Using Single-Virus Tracking and Machine Learning.

Journal: ACS nano
PMID:

Abstract

The outbreak of emerging acute viral diseases urgently requires the acceleration of specialized antiviral drug development, thus widely adopting phenotypic screening as a strategy for drug repurposing in antiviral research. However, traditional phenotypic screening methods typically require several days of experimental cycles and lack visual confirmation of a drug's ability to inhibit viral infection. Here, we report a robust method that utilizes quantum-dot-based single-virus tracking and machine learning to generate unique single-virus infection fingerprint data from viral trajectories and detect the dynamic changes in viral movement following drug administration. Our findings demonstrated that this approach can successfully identify viral infection patterns at various infection phases and predict antiviral drug efficacy through machine learning within 90 min. This method provides valuable support for assessing the efficacy of antiviral drugs and offers promising applications for responding to future outbreaks of emerging viruses.

Authors

  • Meng-Die Zhu
    State Key Laboratory of Medicinal Chemical Biology, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, School of Medicine and Frontiers Science Center for Cell Responses, Nankai University, Tianjin 300071, P. R. China.
  • Xue-Hui Shi
    State Key Laboratory of Medicinal Chemical Biology, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, School of Medicine and Frontiers Science Center for Cell Responses, Nankai University, Tianjin 300071, P. R. China.
  • Hui-Ping Wen
    State Key Laboratory of Medicinal Chemical Biology, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, School of Medicine and Frontiers Science Center for Cell Responses, Nankai University, Tianjin 300071, P. R. China.
  • Li-Ming Chen
    School of Computing, Ulster University, Belfast NIC100166, UK.
  • Dan-Dan Fu
    College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, P. R. China.
  • Lei Du
    School of Mathematical Sciences, Dalian University of Technology, Chuangxinyuan Building, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, Liaoning, China.
  • Jing Li
    Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China.
  • Qian-Qian Wan
    State Key Laboratory of Medicinal Chemical Biology, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, School of Medicine and Frontiers Science Center for Cell Responses, Nankai University, Tianjin 300071, P. R. China.
  • Zhi-gang Wang
  • Chuanming Yu
    State Key Laboratory of Medicinal Chemical Biology, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, School of Medicine and Frontiers Science Center for Cell Responses, Nankai University, Tianjin 300071, P. R. China.
  • Dai-Wen Pang
    State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, and School of Medicine, Nankai University, Tianjin, 300071, P. R. China.
  • Shu-Lin Liu
    State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, College of Chemistry, and School of Medicine, Nankai University, Tianjin, 300071, P. R. China.