Estimation of mesophyll conductance in Ginkgo biloba from the PSII redox state using a machine learning approach.

Journal: Tree physiology
PMID:

Abstract

Mesophyll conductance (gm) has been proved to be one of the important factors limiting photosynthesis and thus affects the estimation of plant productivity and terrestrial carbon balance. However, beyond the leaf scale, gm is usually assumed to be infinite because of the unavailability of the estimating technology. In this study, we first verified the important role of gm on photosynthesis by utilizing a wide range of ginkgo (Ginkgo biloba L.) families. Then, the dataset was adopted to establish a random forest-based gm estimation approach with the drivers being selected under the guidance of several mechanistic models (e.g. Farquhar, von Caemmerer, Berry model, the mechanistic light reaction model of photosynthesis). This model exhibited high predictive accuracy, utilizing both the measured fraction of open reaction centers in PSII (qL) (R2 = 0.71, RMSE = 0.008) and the estimated qL (R2 = 0.70, RMSE = 0.008) as inputs. Since qL, a key physiological driver in the model, can be obtained from chlorophyll fluorescence of PSII (SIFPSII) using the open-closed (OC) redox model of photosynthetic electron transport, this leaf-scale model could potentially be applied beyond the leaf scale, provided that environmental data are available. Direct measurements also confirmed the close relationship between qL and gm under ambient CO2 concentration and saturated light conditions. Our findings pave the way for additional attempts to estimate gm across a variety of scales.

Authors

  • Jimei Han
    State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Road, Xuanwu District, Nanjing 210037, China.
  • Lehao Li
    State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Road, Xuanwu District, Nanjing 210037, China.
  • Xin Yang
    Department of Oral Maxillofacial-Head Neck Oncology, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, National Clinical Research Center for Oral Diseases, Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
  • Zihan Wei
    College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China. Electronic address: 2112012201@zjut.edu.cn.
  • Xina Su
    Department of Statistics, School of Mathematics and Statistics, Shandong University of Technology, 12 Zhangzhou Road, Zhangdian District, Zibo, Shandong 255049, China.
  • Fuliang Cao
    State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Road, Xuanwu District, Nanjing 210037, China.
  • Yuxuan Meng
    School of Electrical Engineering and Automation, Henan Key Laboratory of Intelligent Detection and Control of Coal Mine Equipment, Henan Polytechnic University, Jiaozuo 454003, China.
  • Yang Wu
  • Tingting Dai
    State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Road, Xuanwu District, Nanjing 210037, China.
  • Guibin Wang
    State Key Laboratory of Medical Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.