Joint high-resolution feature learning and vessel-shape aware convolutions for efficient vessel segmentation.

Journal: Computers in biology and medicine
PMID:

Abstract

Clear imagery of retinal vessels is one of the critical shreds of evidence in specific disease diagnosis and evaluation, including sophisticated hierarchical topology and plentiful-and-intensive capillaries. In this work, we propose a new topology- and shape-aware model named Multi-branch Vessel-shaped Convolution Network (MVCN) to adaptively learn high-resolution representations from retinal vessel imagery and thereby capture high-quality topology and shape information thereon. Two steps are involved in our pipeline. The former step is proposed as Multiple High-resolution Ensemble Module (MHEM) to enhance high-resolution characteristics of retinal vessel imagery via fusing scale-invariant hierarchical topology thereof. The latter is a novel vessel-shaped convolution that captures the retinal vessel topology to emerge from unrelated fundus structures. Moreover, our MVCN of separating such topology from the fundus is a dynamical multiple sub-label generation via using epistemic uncertainty, instead of manually separating raw labels to distinguish definitive and uncertain vessels. Compared to other existing methods, our method achieves the most advanced AUC values of 98.31%, 98.80%, 98.83%, and 98.65%, and the most advanced ACC of 95.83%, 96.82%, 97.09%,and 96.66% in DRIVE, CHASE_DB1, STARE, and HRF datasets. We also employ correctness, completeness, and quality metrics to evaluate skeletal similarity. Our method's evaluation metrics have doubled compared to previous methods, thereby demonstrating the effectiveness thereof.

Authors

  • Xiang Zhang
    Department of Orthopedics, Orthopedic Research Institute, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
  • Qiang Zhu
  • Tao Hu
    Department of Preventive Dentistry, State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, China.
  • Song Guo
    Nankai University, Tianjin, China.
  • Genqing Bian
    College of Information and Control Engineering, Xi'an University of Architecture and Technology, Xi'an, China.
  • Wei Dong
    Department of Cardiology, Chinese PLA General Hospital, Beijing, China.
  • Rao Hong
    School of Software, Nanchang University, Nanchang, China.
  • Xia Ling Lin
    School of Software, Nanchang University, Nanchang, China.
  • Peng Wu
    Department of Orthopedics, General Hospital of Ningxia Medical University, Yinchuan, China.
  • Meili Zhou
    Shaanxi Provincial Key Lab of Bigdata of Energy and Intelligence Processing, School of Physics and Electronic Information, Yanan University, Yanan, China. Electronic address: zml@yau.edu.cn.
  • Qingsen Yan
  • Ghulam Mohi-Ud-Din
    School of Cyber Security, Zhejiang University, Hangzhou, China. Electronic address: mohiuddin@ncu.edu.cn.
  • Chen Ai
    Center for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.
  • Zhou Li