A deep convolutional neural network-based novel class balancing for imbalance data segmentation.

Journal: Scientific reports
Published Date:

Abstract

Retinal fundus images provide valuable insights into the human eye's interior structure and crucial features, such as blood vessels, optic disk, macula, and fovea. However, accurate segmentation of retinal blood vessels can be challenging due to imbalanced data distribution and varying vessel thickness. In this paper, we propose BLCB-CNN, a novel pipeline based on deep learning and bi-level class balancing scheme to achieve vessel segmentation in retinal fundus images. The BLCB-CNN scheme uses a Convolutional Neural Network (CNN) architecture and an empirical approach to balance the distribution of pixels across vessel and non-vessel classes and within thin and thick vessels. Level-I is used for vessel/non-vessel balancing and Level-II is used for thick/thin vessel balancing. Additionally, pre-processing of the input retinal fundus image is performed by Global Contrast Normalization (GCN), Contrast Limited Adaptive Histogram Equalization (CLAHE), and gamma corrections to increase intensity uniformity as well as to enhance the contrast between vessels and background pixels. The resulting balanced dataset is used for classification-based segmentation of the retinal vascular tree. We evaluate the proposed scheme on standard retinal fundus images and achieve superior performance measures, including an area under the ROC curve of 98.23%, Accuracy of 96.22%, Sensitivity of 81.57%, and Specificity of 97.65%. We also demonstrate the method's efficacy through external cross-validation on STARE images, confirming its generalization ability.

Authors

  • Atifa Kalsoom
    Department of Computer Science, COMSATS University Islambad, Lahore Campus, Islamabad, Pakistan.
  • M A Iftikhar
    Department of Computer Science, COMSATS University Islambad, Lahore Campus, Islamabad, Pakistan.
  • Amjad Ali
    Department of Computer Science, University of Peshawar, Peshawar, Pakistan.
  • Zubair Shah
    College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.
  • Shidin Balakrishnan
    Department of Surgery, Hamad Medical Corporation (HMC), PO Box 3050, Doha, Qatar.
  • Hazrat Ali
    College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.