DTIP-WINDGRU a novel drug-target interaction prediction with wind-enhanced gated recurrent unit.

Journal: BMC bioinformatics
Published Date:

Abstract

BACKGROUND: Identification of drug target interactions (DTI) is an important part of the drug discovery process. Since prediction of DTI using laboratory tests is time consuming and laborious, automated tools using computational intelligence (CI) techniques become essential. The prediction of DTI is a challenging process due to the absence of known drug-target relationship and no experimentally verified negative samples. The datasets with limited or unbalanced data, do not perform well. The models that use heterogeneous networks, non-linear fusion techniques, and heuristic similarity selection may need a lot of computational power and experience to implement and fine-tune. The latest developments in machine learning (ML) and deep learning (DL) models can be employed for effective DTI prediction process.

Authors

  • Kavipriya Gananathan
    School of Computer Science Engineering (SCOPE), Vellore Institute of Technology, Chennai, 600127, India. kavipriya.g@vit.ac.in.
  • D Manjula
  • Vijayan Sugumaran
    Center for Data Science and Big Data Analytics, Oakland University, Rochester, MI, USA; Department of Decision and Information Sciences, School of Business Administration, Oakland University, Rochester, MI, USA. Electronic address: sugumara@oakland.edu.