"Several birds with one stone": exploring the potential of AI methods for multi-target drug design.

Journal: Molecular diversity
Published Date:

Abstract

Drug discovery is a time-consuming and expensive process. Artificial intelligence (AI) methodologies have been adopted to cut costs and speed up the drug development process, serving as promising in silico approaches to efficiently design novel drug candidates targeting various health conditions. Most existing AI-driven drug discovery studies follow a single-target approach which focuses on identifying compounds that bind a target (i.e., one-drug-one-target approach). Polypharmacology is a relatively new concept that takes a systematic approach to search for a compound (or a combination of compounds) that can bind two or more carefully selected protein biomarkers simultaneously to synergistically treat the disease. Recent studies have demonstrated that multi-target drugs offer superior therapeutic potentials compared to single-target drugs. However, it is intuitively thought that searching for multi-target drugs is more challenging than finding single-target drugs. At present, it is unclear how AI approaches perform in designing multi-target drugs. In this paper, we comprehensively investigated the performance of multi-objective AI approaches for multi-target drug design. Our findings are quite counter-intuitive demonstrating that, in fact, AI approaches for multi-target drug design are able to efficiently generate more high-quality novel compounds than the single-target approaches while satisfying a number of constraints.

Authors

  • Muhetaer Mukaidaisi
    Department of Computer Science, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, L2S 3A1, Ontario, Canada. Electronic address: mm20ul@brocku.ca.
  • Madiha Ahmed
    Department of Computer Science, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada.
  • Karl Grantham
    Department of Computer Science, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, L2S 3A1, Ontario, Canada. Electronic address: kg16wk@brocku.ca.
  • Aws Al-Jumaily
    Department of Computer Science, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada.
  • Shoukat Dedhar
    British Columbia Cancer Research Centre, Department of Biochemistry and Molecular Biology, University of British Columbia, 675 West 10th Avenue, Vancouver, British Columbia, V5Z 1G1, Canada.
  • Michael Organ
    Department of Chemistry and Biomolecular Sciences, University of Ottawa, 75 Laurier Avenue E, Ottawa, Ontario, K1N 6N5, Canada.
  • Alain Tchagang
    Digital Technologies Research Centre, National Research Council of Canada, 1200 Montréal Road, Ottawa, ON, K1A 0R6, Canada.
  • Jinqiang Hou
    Department of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario, P7B 5E1, Canada.
  • Syed Ejaz Ahmed
    Department of Mathematics and Statistics, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada.
  • Renata Dividino
    Department of Computer Science, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada. rdividino@brocku.ca.
  • Yifeng Li
    Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Department of Medical Genetics, University of British Columbia Vancouver, British Columbia V5Z 4H4, Canada; Information and Communications Technologies, National Research Council of Canada, Ottawa, Ontario K1A 0R6, Canada. Electronic address: yifeng.li@nrc-cnrc.gc.ca.