Long short-term memory RNN for biomedical named entity recognition.

Journal: BMC bioinformatics
Published Date:

Abstract

BACKGROUND: Biomedical named entity recognition(BNER) is a crucial initial step of information extraction in biomedical domain. The task is typically modeled as a sequence labeling problem. Various machine learning algorithms, such as Conditional Random Fields (CRFs), have been successfully used for this task. However, these state-of-the-art BNER systems largely depend on hand-crafted features.

Authors

  • Chen Lyu
    School of Computer Science, Wuhan University, Wuhan, 430072, Hubei, China.
  • Bo Chen
  • Yafeng Ren
    Guangdong Collaborative Innovation Center for Language Research & Services, Guangdong University of Foreign Studies, Guangzhou, 510420, Guangdong, China.
  • Donghong Ji
    School of Computer, Wuhan University, Wuhan, 430072, China. dhji@whu.edu.cn.