"Ring Breaker": Neural Network Driven Synthesis Prediction of the Ring System Chemical Space.

Journal: Journal of medicinal chemistry
Published Date:

Abstract

Ring systems in pharmaceuticals, agrochemicals, and dyes are ubiquitous chemical motifs. While the synthesis of common ring systems is well described and novel ring systems can be readily and computationally enumerated, the synthetic accessibility of unprecedented ring systems remains a challenge. "Ring Breaker" uses a data-driven approach to enable the prediction of ring-forming reactions, for which we have demonstrated its utility on frequently found and unprecedented ring systems, in agreement with literature syntheses. We demonstrate the performance of the neural network on a range of ring fragments from the ZINC and DrugBank databases and highlight its potential for incorporation into computer aided synthesis planning tools. These approaches to ring formation and retrosynthetic disconnection offer opportunities for chemists to explore and select more efficient syntheses/synthetic routes.

Authors

  • Amol Thakkar
    Hit Discovery, Discovery Sciences, R&D, AstraZeneca Gothenburg, Sweden; Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland.
  • Nidhal Selmi
    Hit Discovery, Discovery Sciences, R&D, AstraZeneca, Gothenburg 431 50, Sweden.
  • Jean-Louis Reymond
    Department of Chemistry and Biochemistry, University of Bern Freiestrasse 3 3012 Bern Switzerland.
  • Ola Engkvist
    Hit Discovery, Discovery Sciences, Innovative Medicines and Early Development Biotech Unit, AstraZeneca R&D Gothenburg, 431 83, Mölndal, Sweden.
  • Esben Jannik Bjerrum
    Wildcard Pharmaceutical Consulting, Zeaborg Science Center, Frødings Allé 41 , 2860 Søborg , Denmark.