Machine learning active-nematic hydrodynamics.

Journal: Proceedings of the National Academy of Sciences of the United States of America
Published Date:

Abstract

Hydrodynamic theories effectively describe many-body systems out of equilibrium in terms of a few macroscopic parameters. However, such parameters are difficult to determine from microscopic information. Seldom is this challenge more apparent than in active matter, where the hydrodynamic parameters are in fact fields that encode the distribution of energy-injecting microscopic components. Here, we use active nematics to demonstrate that neural networks can map out the spatiotemporal variation of multiple hydrodynamic parameters and forecast the chaotic dynamics of these systems. We analyze biofilament/molecular-motor experiments with microtubule/kinesin and actin/myosin complexes as computer vision problems. Our algorithms can determine how activity and elastic moduli change as a function of space and time, as well as adenosine triphosphate (ATP) or motor concentration. The only input needed is the orientation of the biofilaments and not the coupled velocity field which is harder to access in experiments. We can also forecast the evolution of these chaotic many-body systems solely from image sequences of their past using a combination of autoencoders and recurrent neural networks with residual architecture. In realistic experimental setups for which the initial conditions are not perfectly known, our physics-inspired machine-learning algorithms can surpass deterministic simulations. Our study paves the way for artificial-intelligence characterization and control of coupled chaotic fields in diverse physical and biological systems, even in the absence of knowledge of the underlying dynamics.

Authors

  • Jonathan Colen
    Department of Physics, University of Chicago, Chicago, IL 60637.
  • Ming Han
    James Franck Institute, University of Chicago, Chicago, IL 60637.
  • Rui Zhang
    Department of Cardiology, Zhongda Hospital, Medical School of Southeast University, Nanjing, China.
  • Steven A Redford
    James Franck Institute, University of Chicago, Chicago, IL 60637.
  • Linnea M Lemma
    Department of Physics, Brandeis University, Waltham, MA 02454.
  • Link Morgan
    Department of Physics, University of California, Santa Barbara, CA 92111.
  • Paul V Ruijgrok
    Department of Bioengineering, Stanford University, Stanford, CA 94305.
  • Raymond Adkins
    Department of Physics, University of California, Santa Barbara, CA 92111.
  • Zev Bryant
    Department of Bioengineering, Stanford University, Stanford, CA 94305.
  • Zvonimir Dogic
    Department of Physics, University of California, Santa Barbara, CA 92111.
  • Margaret L Gardel
    Department of Physics, University of Chicago, Chicago, IL 60637.
  • Juan J de Pablo
    Pritzer School of Molecular Engineering, University of Chicago, Chicago, IL 60637; vitelli@uchicago.edu depablo@uchicago.edu.
  • Vincenzo Vitelli
    Department of Physics, University of Chicago, Chicago, IL 60637; vitelli@uchicago.edu depablo@uchicago.edu.