Fluorescence microscopy datasets for training deep neural networks.

Journal: GigaScience
Published Date:

Abstract

BACKGROUND: Fluorescence microscopy is an important technique in many areas of biological research. Two factors that limit the usefulness and performance of fluorescence microscopy are photobleaching of fluorescent probes during imaging and, when imaging live cells, phototoxicity caused by light exposure. Recently developed methods in machine learning are able to greatly improve the signal-to-noise ratio of acquired images. This allows researchers to record images with much shorter exposure times, which in turn minimizes photobleaching and phototoxicity by reducing the dose of light reaching the sample.

Authors

  • Guy M Hagen
    UCCS BioFrontiers Center, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, CO 80918, USA.
  • Justin Bendesky
    UCCS BioFrontiers Center, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, CO 80918, USA.
  • Rosa Machado
    UCCS BioFrontiers Center, University of Colorado at Colorado Springs, 1420 Austin Bluffs Parkway, Colorado Springs, CO 80918, USA.
  • Tram-Anh Nguyen
    George Mason University, 4400 University Drive, Fairfax, VA 22030, USA.
  • Tanmay Kumar
    Department of Computer Science and Software Engineering, California Polytechnic State University, San Luis Obispo, CA 93407, USA.
  • Jonathan Ventura
    Department of Computer Science and Software Engineering, California Polytechnic State University, San Luis Obispo, CA 93407, USA.