Accurate diagnosis of lung tissues for 2D Raman spectrogram by deep learning based on short-time Fourier transform.

Journal: Analytica chimica acta
Published Date:

Abstract

Multivariate statistical analysis methods have an important role in spectrochemical analyses to rapidly identify and diagnose cancer and the subtype. However, utilizing these methods to analyze lager amount spectral data is challenging, and poses a major bottleneck toward achieving high accuracy. Here, a new convolutional neural networks (CNN) method based on short-time Fourier transform (STFT) to diagnose lung tissues via Raman spectra readily is proposed. The models yield that the accuracies of the new method are higher than the conventional methods (principal components analysis -linear discriminant analysis and support vector machine) for validation group (95.2% vs 85.5%, 94.4%) and test group (96.5% vs 90.4%, 93.9%) after cross-validation. The results illustrate that the new method which converts one-dimensional Raman data into two-dimensional Raman spectrograms improve the discriminatory ability of lung tissues and can achieve automatically accurate diagnosis of lung tissues.

Authors

  • Yafeng Qi
    State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.
  • Lin Yang
    National Clinical Research Center for Metabolic Diseases, Key Laboratory of Diabetes Immunology (Central South University), Ministry of Education, and Department of Metabolism and Endocrinology, The Second Xiangya Hospital of Central South University, Changsha, China.
  • Bangxu Liu
    State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.
  • Li Liu
    Metanotitia Inc., Shenzhen, China.
  • Yuhong Liu
    State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China. Electronic address: liuyuhong@tsinghua.edu.cn.
  • Qingfeng Zheng
    Department of Thoracic Surgery, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China. Electronic address: qfzhengpku@163.com.
  • Dameng Liu
    State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China. Electronic address: ldm@tsinghua.edu.cn.
  • Jianbin Luo
    State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.