Improve automatic detection of animal call sequences with temporal context.

Journal: Journal of the Royal Society, Interface
Published Date:

Abstract

Many animals rely on long-form communication, in the form of songs, for vital functions such as mate attraction and territorial defence. We explored the prospect of improving automatic recognition performance by using the temporal context inherent in song. The ability to accurately detect sequences of calls has implications for conservation and biological studies. We show that the performance of a convolutional neural network (CNN), designed to detect song notes (calls) in short-duration audio segments, can be improved by combining it with a recurrent network designed to process sequences of learned representations from the CNN on a longer time scale. The combined system of independently trained CNN and long short-term memory (LSTM) network models exploits the temporal patterns between song notes. We demonstrate the technique using recordings of fin whale () songs, which comprise patterned sequences of characteristic notes. We evaluated several variants of the CNN + LSTM network. Relative to the baseline CNN model, the CNN + LSTM models reduced performance variance, offering a 9-17% increase in area under the precision-recall curve and a 9-18% increase in peak F1-scores. These results show that the inclusion of temporal information may offer a valuable pathway for improving the automatic recognition and transcription of wildlife recordings.

Authors

  • Shyam Madhusudhana
    K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA.
  • Yu Shiu
    K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA.
  • Holger Klinck
    Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, NY 14850.
  • Erica Fleishman
    College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, USA.
  • Xiaobai Liu
    Department of Computer Science, San Diego State University, San Diego, CA, USA.
  • Eva-Marie Nosal
    Department of Ocean and Resources Engineering, University of Hawai'i at Mānoa, Honolulu, HI, USA.
  • Tyler Helble
    US Navy, Naval Information Warfare Center Pacific, San Diego, CA, USA.
  • Danielle Cholewiak
    Northeast Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Woods Hole, MA, USA.
  • Douglas Gillespie
    Sea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, St Andrews, UK.
  • Ana Širović
    Marine Biology Department, Texas A&M University at Galveston, Galveston, TX, USA.
  • Marie A Roch
    Department of Computer Science, San Diego State University, 5500 Campanile Drive, San Diego, California 92182-7720.