Efficient high cone-angle artifact reduction in circular cone-beam CT using deep learning with geometry-aware dimension reduction.

Journal: Physics in medicine and biology
Published Date:

Abstract

High cone-angle artifacts (HCAAs) appear frequently in circular cone-beam computed tomography (CBCT) images and can heavily affect diagnosis and treatment planning. To reduce HCAAs in CBCT scans, we propose a novel deep learning approach that reduces the three-dimensional (3D) nature of HCAAs to two-dimensional (2D) problems in an efficient way. Specifically, we exploit the relationship between HCAAs and the rotational scanning geometry by training a convolutional neural network (CNN) using image slices that were radially sampled from CBCT scans. We evaluated this novel approach using a dataset of input CBCT scans affected by HCAAs and high-quality artifact-free target CBCT scans. Two different CNN architectures were employed, namely U-Net and a mixed-scale dense CNN (MS-D Net). The artifact reduction performance of the proposed approach was compared to that of a Cartesian slice-based artifact reduction deep learning approach in which a CNN was trained to remove the HCAAs from Cartesian slices. In addition, all processed CBCT scans were segmented to investigate the impact of HCAAs reduction on the quality of CBCT image segmentation. We demonstrate that the proposed deep learning approach with geometry-aware dimension reduction greatly reduces HCAAs in CBCT scans and outperforms the Cartesian slice-based deep learning approach. Moreover, the proposed artifact reduction approach markedly improves the accuracy of the subsequent segmentation task compared to the Cartesian slice-based workflow.

Authors

  • Jordi Minnema
    Amsterdam UMC and Academic Centre for Dentistry Amsterdam (ACTA), Vrije Universiteit Amsterdam, Department of Oral and Maxillofacial Surgery/Pathology, 3D Innovation Lab, Amsterdam Movement Sciences, de Boelelaan 1117, Amsterdam, the Netherlands. Electronic address: j.minnema@vumc.nl.
  • Maureen van Eijnatten
    Amsterdam UMC and Academic Centre for Dentistry Amsterdam (ACTA), Vrije Universiteit Amsterdam, Department of Oral and Maxillofacial Surgery/Pathology, 3D Innovation Lab, Amsterdam Movement Sciences, de Boelelaan 1117, Amsterdam, the Netherlands; Centrum Wiskunde & Informatica (CWI), Science Park 123, Amsterdam, the Netherlands.
  • Henri der Sarkissian
    Centrum Wiskunde & Informatica (CWI), 1090 GB Amsterdam, The Netherlands.
  • Shannon Doyle
    Centrum Wiskunde & Informatica (CWI), 1090 GB Amsterdam, The Netherlands.
  • Juha Koivisto
    Department of Physics, University of Helsinki, Gustaf Hällsströmin katu 2, FI-00560, Helsinki, Finland.
  • Jan Wolff
    Amsterdam UMC and Academic Centre for Dentistry Amsterdam (ACTA), Vrije Universiteit Amsterdam, Department of Oral and Maxillofacial Surgery/Pathology, 3D Innovation Lab, Amsterdam Movement Sciences, de Boelelaan 1117, Amsterdam, the Netherlands; Department of Oral and Maxillofacial Surgery, Division for Regenerative Orofacial Medicine, University Hospital Hamburg-Eppendorf, Hamburg, Germany.
  • Tymour Forouzanfar
    Department of Oral and Maxillofacial Surgery/Pathology, Amsterdam UMC and Academic Centre for Dentistry Amsterdam (ACTA), Vrije Universiteit Amsterdam Amsterdam Movement Sciences, 3D Innovationlab, 1081 HV, Amsterdam, The Netherlands.
  • Felix Lucka
  • Kees Joost Batenburg
    Centrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, The Netherlands.