A Classification-Guided Segmentation Algorithm Based on Deep Learning for Epithelium Segmentation in Histopathological Images of Radicular Cysts.
Journal:
Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
PMID:
34892058
Abstract
In histopathological analysis of radicular cysts (RCs), lesions in epithelium can provide pathologists with rich information on pathologic degree, which is helpful to determine the type of periapical lesions and make precise treatment planning. Automatic segmentation and localization of epithelium from whole slide images (WSIs) can assist pathologists to complete pathological diagnosis more quickly. However, the class imbalance problem caused by the small proportion of fragmented epithelium in RCs imposes challenge on the typical automatic one-stage segmentation method. In this paper, we proposed a classification-guided segmentation algorithm (CGSA) for accurate segmentation. Our method was a two-stage model, including a classification network for region of interest (ROI) location and a segmentation network guided by classification. The classification stage eliminated most irrelevant areas and alleviated the class imbalance problem faced by the segmentation model. The results of 5-fold cross validation demonstrated that CGSA outperformed the one-stage segmentation method which was lacking in prior epithelium localization information. The epithelium segmentation achieved an overall Dice's coefficient of 0.722, and intersection over union (IoU) of 0.593, which improved by 5.5% and 5.9% respectively compared with the one-stage segmentation method using UNet.Clinical Relevance- This work presents a framework for automatic epithelium segmentation in histopathological images of RCs. It can be applied to make up for the shortcomings of manual annotation which is labor-intensive, time-consuming and objective.