AttCRISPR: a spacetime interpretable model for prediction of sgRNA on-target activity.
Journal:
BMC bioinformatics
Published Date:
Dec 13, 2021
Abstract
BACKGROUND: More and more Cas9 variants with higher specificity are developed to avoid the off-target effect, which brings a significant volume of experimental data. Conventional machine learning performs poorly on these datasets, while the methods based on deep learning often lack interpretability, which makes researchers have to trade-off accuracy and interpretability. It is necessary to develop a method that can not only match deep learning-based methods in performance but also with good interpretability that can be comparable to conventional machine learning methods.