Deep contrastive learning based tissue clustering for annotation-free histopathology image analysis.

Journal: Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
Published Date:

Abstract

BACKGROUND: Deep convolutional neural networks (CNNs) have yielded promising results in automatic whole slide images (WSIs) processing for digital pathology in recent years. Training supervised CNNs usually requires a large amount of annotated samples. However, manual annotation of gigapixel WSIs is labor-intensive and error-prone, i.e., the shortage of annotations has become the major bottleneck of WSI diagnosis model development. In this work, we aim to develop a deep learning based self-supervised histopathology image analysis workflow that can classify tissues without any annotation.

Authors

  • Jiangpeng Yan
    Shenzhen International Graduate School, Tsinghua University, Shenzhen, Guangdong, China.
  • Hanbo Chen
    Allen Institute for Brain Science, Seattle, WA, USA. cojoc.chen@gmail.com.
  • Xiu Li
    Shenzhen International Graduate School, Tsinghua University, Shenzhen, Guangdong, China.
  • Jianhua Yao