Automatic identification of harmful algae based on multiple convolutional neural networks and transfer learning.

Journal: Environmental science and pollution research international
PMID:

Abstract

The monitoring of harmful phytoplankton is very important for the maintenance of the aquatic ecological environment. Traditional algae monitoring methods require professionals with substantial experience in algae species, which are time-consuming, expensive, and limited in practice. The automatic classification of algae cell images and the identification of harmful phytoplankton images were realized by the combination of multiple convolutional neural networks (CNNs) and deep learning techniques based on transfer learning in this work. Eleven common harmful and 31 harmless phytoplankton genera were collected as input samples; the five CNNs classification models of AlexNet, VGG16, GoogLeNet, ResNet50, and MobileNetV2 were fine-tuned to automatically classify phytoplankton images; and the average accuracy was improved 11.9% when compared to models without fine-tuning. In order to monitor harmful phytoplankton which can cause red tides or produce toxins severely polluting drinking water, a new identification method of harmful phytoplankton which combines the recognition results of five CNN models was proposed, and the recall rate reached 98.0%. The experimental results validate that the recognition performance of harmful phytoplankton could be significantly improved by transfer learning, and the proposed identification method is effective in the preliminary screening of harmful phytoplankton and greatly reduces the workload of professional personnel.

Authors

  • Mengyu Yang
    School of Microelectronics, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China.
  • Wensi Wang
    School of Microelectronics, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China. wensi.wang@bjut.edu.cn.
  • Qiang Gao
    Faculty of Material Science and Chemistry, China University of Geosciences, Wuhan 430074, PR China.
  • Chen Zhao
    Department of Ophthalmology, Fudan Eye & ENT Hospital, Shanghai, China.
  • Caole Li
    State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China.
  • Xiangfei Yang
    School of Engineering, Westlake University, Hangzhou, 310024, China.
  • Jiaxi Li
    Department of Clinical Laboratory Medicine, Jinniu Maternity and Child Health Hospital of Chengdu, Chengdu, China.
  • Xiaoguang Li
    Huzhou Key Laboratory of Green Energy Materials and Battery Cascade Utilization, School of Intelligent Manufacturing, Huzhou College, Huzhou, China.
  • Jianglong Cui
    Chinese Research Academy of Environmental Sciences, Beijing, 100012, China.
  • Liting Zhang
    School of Microelectronics, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China.
  • Yanping Ji
    School of Microelectronics, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China.
  • Shuqin Geng
    School of Microelectronics, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China.