Predicting the evolution trajectory of population-driven connectional brain templates using recurrent multigraph neural networks.

Journal: Medical image analysis
Published Date:

Abstract

The mapping of the time-dependent evolution of the human brain connectivity using longitudinal and multimodal neuroimaging datasets provides insights into the development of neurological disorders and the way they alter the brain morphology, structure and function over time. Recently, the connectional brain template (CBT) was introduced as a compact representation integrating a population of brain multigraphs, where two brain regions can have multiple connections, into a single graph. Given a population of brain multigraphs observed at a baseline timepoint t, we aim to learn how to predict the evolution of the population CBT at follow-up timepoints t>t. Such model will allow us to foresee the evolution of the connectivity patterns of healthy and disordered individuals at the population level. Here we present recurrent multigraph integrator network (ReMI-Net) to forecast population templates at consecutive timepoints from a given single timepoint. In particular, we unprecedentedly design a graph neural network architecture to model the changes in the brain multigraph and identify the biomarkers that differentiate between the typical and atypical populations. Addressing such issues is of paramount importance in diagnosing neurodegenerative disorders at early stages and promoting new clinical studies based on the pinned-down biomarker brain regions or connectivities. In this paper, we demonstrate the design and use of the ReMI-Net model, which learns both the multigraph node level and time level dependencies concurrently. Thanks to its novel graph convolutional design and normalization layers, ReMI-Net predicts well-centered, discriminative, and topologically sound connectional templates over time. Additionally, the results show that our model outperforms all benchmarks and state-of-the-art methods by comparing and discovering the atypical connectivity alterations over time. Our ReMI-Net code is available on GitHub at https://github.com/basiralab/ReMI-Net-Star.

Authors

  • Oytun Demirbilek
    BASIRA lab, Faculty of Computer and Informatics, Istanbul Technical University, Istanbul, Turkey.
  • Islem Rekik
    Department of Radiology and BRIC, University of North Carolina at Chapel Hill, Chapel Hill, USA.