Fully automated condyle segmentation using 3D convolutional neural networks.

Journal: Scientific reports
PMID:

Abstract

The aim of this study was to develop an auto-segmentation algorithm for mandibular condyle using the 3D U-Net and perform a stress test to determine the optimal dataset size for achieving clinically acceptable accuracy. 234 cone-beam computed tomography images of mandibular condyles were acquired from 117 subjects from two institutions, which were manually segmented to generate the ground truth. Semantic segmentation was performed using basic 3D U-Net and a cascaded 3D U-Net. A stress test was performed using different sets of condylar images as the training, validation, and test datasets. Relative accuracy was evaluated using dice similarity coefficients (DSCs) and Hausdorff distance (HD). In the five stages, the DSC ranged 0.886-0.922 and 0.912-0.932 for basic 3D U-Net and cascaded 3D U-Net, respectively; the HD ranged 2.557-3.099 and 2.452-2.600 for basic 3D U-Net and cascaded 3D U-Net, respectively. Stage V (largest data from two institutions) exhibited the highest DSC of 0.922 ± 0.021 and 0.932 ± 0.023 for basic 3D U-Net and cascaded 3D U-Net, respectively. Stage IV (200 samples from two institutions) had a lower performance than stage III (162 samples from one institution). Our results show that fully automated segmentation of mandibular condyles is possible using 3D U-Net algorithms, and the segmentation accuracy increases as training data increases.

Authors

  • Nayansi Jha
    Department of Orthodontics, Asan Medical Center, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Korea.
  • Taehun Kim
    Asan Medical Institute of Convergence Science and Technology, University of Ulsan College of Medicine, Asan Medical Center, Seoul, 05505, Republic of Korea.
  • Sungwon Ham
    Asan Institute for Life Sciences, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea. (S.H.).
  • Seung-Hak Baek
    Department of Orthodontics.
  • Sang-Jin Sung
    Department of Orthodontics, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.
  • Yoon-Ji Kim
    Department of Biomedical Engineering, College of Health Science, Yonsei University, Wonju, Kangwon-do, 26493, South Korea.
  • Namkug Kim
    Department of Radiology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.