Application of machine learning on understanding biomolecule interactions in cellular machinery.

Journal: Bioresource technology
Published Date:

Abstract

Machine learning (ML) applications have become ubiquitous in all fields of research including protein science and engineering. Apart from protein structure and mutation prediction, scientists are focusing on knowledge gaps with respect to the molecular mechanisms involved in protein binding and interactions with other components in the experimental setups or the human body. Researchers are working on several wet-lab techniques and generating data for a better understanding of concepts and mechanics involved. The information like biomolecular structure, binding affinities, structure fluctuations and movements are enormous which can be handled and analyzed by ML. Therefore, this review highlights the significance of ML in understanding the biomolecular interactions while assisting in various fields of research such as drug discovery, nanomedicine, nanotoxicity and material science. Hence, the way ahead would be to force hand-in hand of laboratory work and computational techniques.

Authors

  • Rewati Dixit
    Waste Treatment Laboratory, Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, Haus-khas, New Delhi 110016, India.
  • Khushal Khambhati
    Department of Biosciences, School of Science, Indrashil University, Rajpur, Mehsana 382715, Gujarat, India.
  • Kolli Venkata Supraja
    Waste Treatment Laboratory, Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, Haus-khas, New Delhi 110016, India.
  • Vijai Singh
    Department of Biosciences, School of Science, Indrashil University, Rajpur, Mehsana, 382715, Gujarat, India.
  • Franziska Lederer
    Helmholtz-Zentrum Dresden-Rossendorf, Helmholtz Institute Freiberg for Resource Technology, Bautzner landstrasse 400, 01328 Dresden, Germany.
  • Pau-Loke Show
    Zhejiang Provincial Key Laboratory for Subtropical Water Environment and Marine Biological Resources Protection, Wenzhou University, Wenzhou 325035, China; Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai 602105, India; Department of Chemical and Environmental Engineering, University of Nottingham, Malaysia, 43500 Semenyih, Selangor Darul Ehsan, Malaysia.
  • Mukesh Kumar Awasthi
    College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China.
  • Abhinav Sharma
    Department of Biological Sciences and Bioengineering (BSBE), IIT, Kanpur, India.
  • Rohan Jain
    Helmholtz-Zentrum Dresden-Rossendorf, Helmhholtz Institute Freiberg for Resource Technology, Bautzner Landstrasse 400, 01328 Dresden, Germany. Electronic address: r.jain@hzdr.de.