Machine learning algorithms accurately identify free-living marine nematode species.

Journal: PeerJ
PMID:

Abstract

BACKGROUND: Identifying species, particularly small metazoans, remains a daunting challenge and the phylum Nematoda is no exception. Typically, nematode species are differentiated based on morphometry and the presence or absence of certain characters. However, recent advances in artificial intelligence, particularly machine learning (ML) algorithms, offer promising solutions for automating species identification, mostly in taxonomically complex groups. By training ML models with extensive datasets of accurately identified specimens, the models can learn to recognize patterns in nematodes' morphological and morphometric features. This enables them to make precise identifications of newly encountered individuals. Implementing ML algorithms can improve the speed and accuracy of species identification and allow researchers to efficiently process vast amounts of data. Furthermore, it empowers non-taxonomists to make reliable identifications. The objective of this study is to evaluate the performance of ML algorithms in identifying species of free-living marine nematodes, focusing on two well-known genera: Allgén, 1933 and Rouville, 1903.

Authors

  • Simone Brito de Jesus
    Marine Science Institute, Federal University of São Paulo, Santos, São Paulo, Brazil.
  • Danilo Vieira
    Marine Science Institute, Federal University of São Paulo, Santos, São Paulo, Brazil.
  • Paula Gheller
    Institute Oceanographic, University of São Paulo, São Paulo, Brazil.
  • Beatriz P Cunha
    Department of Animal Biology, State University of Campinas, Campinas, São Paulo, Brazil.
  • Fabiane Gallucci
    Marine Science Institute, Federal University of São Paulo, Santos, São Paulo, Brazil.
  • Gustavo Fonseca
    Marine Science Institute, Federal University of São Paulo, Santos, São Paulo, Brazil.