Adversarial Knowledge Distillation Based Biomedical Factoid Question Answering.

Journal: IEEE/ACM transactions on computational biology and bioinformatics
Published Date:

Abstract

Biomedical factoid question answering is an essential application for biomedical information sharing. Recently, neural network based approaches have shown remarkable performance for this task. However, due to the scarcity of annotated data which requires intensive knowledge of expertise, training a robust model on limited-scale biomedical datasets remains a challenge. Previous works solve this problem by introducing useful knowledge. It is found that the interaction between question and answer (QA-interaction) is also a kind of knowledge which could help extract answer accurately. This research develops a knowledge distillation framework for biomedical factoid question answering, in which a teacher model as the knowledge source of QA-interaction is designed to enhance the student model. In addition, to further alleviate the problem of limited-scale dataset, a novel adversarial knowledge distillation technique is proposed to robustly distill the knowledge from teacher model to student model by constructing perturbed examples as additional training data. By forcing the student model to mimic the predicted distributions of teacher model on both original examples and perturbed examples, the knowledge of QA-interaction can be learned by student model. We evaluate the proposed framework on the widely used BioASQ datasets, and experimental results have shown the proposed method's promising potential.

Authors

  • Jun Bai
    Department of Hematology, Gansu Provincial Key Laboratory of Hematology , Lanzhou University Second Hospital , Lanzhou 730000 , China.
  • Chuantao Yin
  • Jianfei Zhang
    College of Mathematics and Informatics, Fujian Normal University, Fuzhou 350117, China; Département d'Informatique, Université de Sherbrooke, Québec J1K 2R1, Canada. Electronic address: jianfei.zhang@usherbrooke.ca.
  • Yanmeng Wang
    Ping An Technology, Xinyuannanlu No.3, Beijing, 100027, China.
  • Yi Dong
    Department of Neurology, Huashan Hospital, Fudan University, Shanghai, China.
  • Wenge Rong
  • Zhang Xiong