TUnet-LBF: Retinal fundus image fine segmentation model based on transformer Unet network and LBF.

Journal: Computers in biology and medicine
Published Date:

Abstract

Segmentation of retinal fundus images is a crucial part of medical diagnosis. Automatic extraction of blood vessels in low-quality retinal images remains a challenging problem. In this paper, we propose a novel two-stage model combining Transformer Unet (TUnet) and local binary energy function model (LBF), TUnet-LBF, for coarse to fine segmentation of retinal vessels. In the coarse segmentation stage, the global topological information of blood vessels is obtained by TUnet. The neural network outputs the initial contour and the probability maps, which are input to the fine segmentation stage as the priori information. In the fine segmentation stage, an energy modulated LBF model is proposed to obtain the local detail information of blood vessels. The proposed model reaches accuracy (Acc) of 0.9650, 0.9681 and 0.9708 on the public datasets DRIVE, STARE and CHASE_DB1 respectively. The experimental results demonstrate the effectiveness of each component in the proposed model.

Authors

  • Hanyu Zhang
    Department of Environmental Science and Engineering, Beijing Technology and Business University, Beijing 100048, China.
  • Weihan Ni
    School of Computer and Information Technology, Liaoning Normal University, Dalian City, 116029, China. Electronic address: 3325762134@qq.com.
  • Yi Luo
    Electrical and Computer Engineering Department, Bioengineering Department, University of California, Los Angeles, CA 90095 USA, and also with the California NanoSystems Institute, University of California, Los Angeles, CA 90095 USA.
  • Yining Feng
    School of Geography, Liaoning Normal University, Dalian City, 116029, China. Electronic address: 912444862@qq.com.
  • Ruoxi Song
    Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, 100101, China. Electronic address: ruoxisong@qq.com.
  • Xianghai Wang
    School of Geography, Liaoning Normal University, Dalian City, 116029, China; School of Computer and Information Technology, Liaoning Normal University, Dalian City, 116029, China. Electronic address: xhwang@lnnu.edu.cn.