Deep learning in preclinical antibody drug discovery and development.

Journal: Methods (San Diego, Calif.)
Published Date:

Abstract

Antibody drugs have become a key part of biotherapeutics. Patients suffering from various diseases have benefited from antibody therapies. However, its development process is rather long, expensive and risky. To speed up the process, reduce cost and improve success rate, artificial intelligence, especially deep learning methods, have been widely used in all aspects of preclinical antibody drug development, from library generation to hit identification, developability screening, lead selection and optimization. In this review, we systematically summarize antibody encodings, deep learning architectures and models used in preclinical antibody drug discovery and development. We also critically discuss challenges and opportunities, problems and possible solutions, current applications and future directions of deep learning in antibody drug development.

Authors

  • Yuwei Zhou
    Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 637111, China.
  • Ziru Huang
    School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China.
  • Wenzhen Li
    The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
  • Jinyi Wei
    School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China.
  • Qianhu Jiang
    School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China.
  • Wei Yang
    Key Laboratory of Structure-Based Drug Design and Discovery (Shenyang Pharmaceutical University), Ministry of Education, School of Traditional Chinese Materia Medica, Shenyang Pharmaceutical University, Wenhua Road 103, Shenyang 110016, PR China. Electronic address: 421063202@qq.com.
  • Jian Huang
    Center for Informational Biology, University of Electronic Science and Technology of China, No. 2006, Xiyuan Ave, West Hi-Tech Zone, Chengdu 611731, P. R. China.