Hit Identification Driven by Combining Artificial Intelligence and Computational Chemistry Methods: A PI5P4K-β Case Study.

Journal: Journal of chemical information and modeling
PMID:

Abstract

Computer-aided drug design (CADD), especially artificial intelligence-driven drug design (AIDD), is increasingly used in drug discovery. In this paper, a novel and efficient workflow for hit identification was developed within the drug discovery platform, featuring innovative artificial intelligence, high-accuracy computational chemistry, and high-performance cloud computing. The workflow was validated by discovering a few potent hit compounds (best IC is ∼0.80 μM) against PI5P4K-β, a novel anti-cancer target. Furthermore, by applying the tools implemented in , we managed to optimize these hit compounds and finally obtained five hit series with different scaffolds, all of which showed high activity against PI5P4K-β. These results demonstrate the effectiveness of in driving hit identification based on artificial intelligence, computational chemistry, and cloud computing.

Authors

  • Lin Wei
    International Cooperation Base of Pesticide and Green Synthesis (Hubei), Key Laboratory of Pesticide & Chemical Biology (CCNU), Ministry of Education, Department of Chemistry, Central China Normal University, Wuhan 430079, China.
  • Min Xu
    Department of Gastroenterology, Shanghai First People's Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
  • Zhiqiang Liu
    Shenzhen Key Laboratory of Reproductive Immunology for Peri-implantation, Shenzhen Zhongshan Institute for Reproductive Medicine and Genetics, Shenzhen, China.
  • Chongguo Jiang
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Xiaohua Lin
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Yaogang Hu
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Xiaoming Wen
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Rongfeng Zou
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Chunwang Peng
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Hongrui Lin
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Guo Wang
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Lijun Yang
    School of Mathematics and Statistics, Henan University, Kaifeng 475004, People's Republic of China. Author to whom any correspondence should be addressed.
  • Lei Fang
    Nanomix, Inc, Emeryville, California (Fang, Yamaguchi).
  • Mingjun Yang
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.
  • Peiyu Zhang
    Shenzhen Jingtai Technology Co., Ltd. (XtalPi), Shenzhen 518000, China.