Automatedly identify dryland threatened species at large scale by using deep learning.

Journal: The Science of the total environment
PMID:

Abstract

Dryland biodiversity is decreasing at an alarming rate. Advanced intelligent tools are urgently needed to rapidly, automatedly, and precisely detect dryland threatened species on a large scale for biological conservation. Here, we explored the performance of three deep convolutional neural networks (Deeplabv3+, Unet, and Pspnet models) on the intelligent recognition of rare species based on high-resolution (0.3 m) satellite images taken by an unmanned aerial vehicle (UAV). We focused on a threatened species, Populus euphratica, in the Tarim River Basin (China), where there has been a severe population decline in the 1970s and restoration has been carried out since 2000. The testing results showed that Unet outperforms Deeplabv3+ and Pspnet when the training samples are lower, while Deeplabv3+ performs best as the dataset increases. Overall, when training samples are 80, Deeplabv3+ had the best overall performance for Populus euphratica identification, with mean pixel accuracy (MPA) between 87.31 % and 90.2 %, which, on average is 3.74 % and 11.29 % higher than Unet and Pspnet, respectively. Deeplabv3+ can accurately detect the boundaries of Populus euphratica even in areas of dense vegetation, with lower identification uncertainty for each pixel than other models. This study developed a UAV imagery-based identification framework using deep learning with high resolution in large-scale regions. This approach can accurately capture the variation in dryland threatened species, especially those in inaccessible areas, thereby fostering rapid and efficient conservation actions.

Authors

  • Haolin Wang
    College of Medical Informatics, Chongqing Medical University, Chongqing 400016, People's Republic of China.
  • Qi Liu
    National Institute of Traditional Chinese Medicine Constitution and Preventive Medicine, Beijing University of Chinese Medicine, Beijing, China.
  • Dongwei Gui
    State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.
  • Yunfei Liu
    State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; Cele National Station of Observation & Research for Desert Grassland Ecosystem in Xinjiang, Cele 848300, China.
  • Xinlong Feng
    College of Mathematics and System Sciences, Xinjiang University, Urumqi 830017, China.
  • Jia Qu
    National Clinical Research Center for Ocular Diseases, Eye Hospital, Wenzhou Medical University, Wenzhou, China. Electronic address: jia.qu@163.com.
  • Jianping Zhao
    National Center for Natural Products Research, Research Institute of Pharmaceutical Sciences, University of Mississippi, Oxford, MS, United States.
  • Guanghui Wei
    Xinjiang Tarim River Basin Management Bureau, Korla 841000, China.