EffiSegNet: Gastrointestinal Polyp Segmentation through a Pre-Trained EfficientNet-based Network with a Simplified Decoder.

Journal: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Published Date:

Abstract

This work introduces EffiSegNet, a novel segmentation framework leveraging transfer learning with a pre-trained Convolutional Neural Network (CNN) classifier as its backbone. Deviating from traditional architectures with a symmetric U-shape, EffiSegNet simplifies the decoder and utilizes full-scale feature fusion to minimize computational cost and the number of parameters. We evaluated our model on the gastrointestinal polyp segmentation task using the publicly available Kvasir-SEG dataset, achieving state-of-the-art results. Specifically, the EffiSegNet-B4 network variant achieved an F 1 score of 0.9552, mean Dice (mDice) 0.9483, mean Intersection over Union (mIoU) 0.9056, Precision 0.9679, and Recall 0.9429 with a pre-trained backbone - to the best of our knowledge, the highest reported scores in the literature for this dataset. Additional training from scratch also demonstrated exceptional performance compared to previous work, achieving an F 1 score of 0.9286, mDice 0.9207, mIoU 0.8668, Precision 0.9311 and Recall 0.9262. These results underscore the importance of a well-designed encoder in image segmentation networks and the effectiveness of transfer learning approaches.

Authors

  • Ioannis A Vezakis
  • Konstantinos Georgas
  • Dimitrios Fotiadis
    FORTH-ICS, N Plastira 100, Heraklion, Crete, Greece.
  • George K Matsopoulos
    Biomedical Engineering Laboratory, School of Electrical and Computer Engineering, National Technical University of Athens, 15780 Athens, Greece.