Neuronal Waveform Classification in Multielectrode Recordings Using Machine Learning Techniques and Multidimensional Analysis.

Journal: International journal of neural systems
Published Date:

Abstract

Extracellular recordings of neuronal spikes are crucial for studying brain activity. These signals are typically classified based on firing patterns and waveform shape, particularly trough-to-peak duration. While useful, this method oversimplifies the diversity of cortical neurons and discharge patterns. Recent advances in recording and analysis techniques allow for more precise waveform classification, though the main criteria remain waveform features. We aim to develop an automatic spike waveform classifier using advanced machine learning techniques selected from a range of candidate methods based on their optimized performance, such as Uniform Manifold Approximation and Projection (UMAP), Gaussian Mixture Model (GMM), and Random Forest (RF). The classifier is part of the working progress of a preprocessing pipeline previously developed. For the classifying step, we use all voltage samples that define each waveform, enabling a multi-dimensional analysis. To evaluate our approach, RF model was trained and tested on a subset of electrophysiological recordings from the human visual cortex achieving high [Formula: see text]-scores. The comparison of the classified neurons was carried out between our method and a waveform analysis toolbox described in the literature. Our method improves the characterization of the clusters of waveforms based on statistical measurements that found a third group while the accepted method categorizes just broad and narrow waveforms, labeling some as unclassifiable.

Authors

  • Rocío López-Peco
    Instituto de Bioingeniería, Universidad Miguel Hernández, Avenida de la Universidad s/n, Elche, Alicante 03202, Spain.
  • Mikel Val-Calvo
    Departamento de Electrónica, Tecnología de Computadoras, Universidad Politécnica de Cartagena, Cartagena, Spain.
  • Cristina Soto-Sánchez
    Neuroprosthetics and Visual Rehabilitation Research Unit, Bioengineering Institute, Miguel Hernández University, Alicante, Spain.
  • Adrián Villamarin-Ortiz
    Instituto de Bioingeniería, Universidad Miguel Hernández, Avenida de la Universidad s/n, Elche, Alicante 03202, Spain.
  • Gloria Ruiz-Boix
    Instituto de Bioingeniería, Universidad Miguel Hernández, Avenida de la Universidad s/n, Elche, Alicante 03202, Spain.
  • José Manuel Ferrández-Vicente
    Departamento Electrónica, Tecnología de Computadoras y Proyectos, Universidad Politécnica de Cartagena, Plaza Cronista Isidro Valverde, Cartagena, Murcia 30202 Cartagena, Spain.
  • Eduardo Fernandez
    Neuroprosthetics and Visual Rehabilitation Research Unit, Bioengineering Institute, Miguel Hernández University, Alicante, Spain.