An enhanced harmonic densely connected hybrid transformer network architecture for chronic wound segmentation utilising multi-colour space tensor merging.

Journal: Computers in biology and medicine
Published Date:

Abstract

Chronic wounds and associated complications present ever growing burdens for clinics and hospitals world wide. Venous, arterial, diabetic, and pressure wounds are becoming increasingly common globally. These conditions can result in highly debilitating repercussions for those affected, with limb amputations and increased mortality risk resulting from infection becoming more common. New methods to assist clinicians in chronic wound care are therefore vital to maintain high quality care standards. This paper presents an improved HarDNet segmentation architecture which integrates a contrast-eliminating component in the initial layers of the network to enhance feature learning. We also utilise a multi-colour space tensor merging process and adjust the harmonic shape of the convolution blocks to facilitate these additional features. We train our proposed model using wound images from light skinned patients and test the model on two test sets (one set with ground truth, and one without) comprising only darker skinned cases. Subjective ratings are obtained from clinical wound experts with intraclass correlation coefficient used to determine inter-rater reliability. For the dark skin tone test set with ground truth, when comparing the baseline results (DSC=0.6389, IoU=0.5350) with the results for the proposed model (DSC=0.7610, IoU=0.6620) we demonstrate improvements in terms of Dice similarity coefficient (+0.1221) and intersection over union (+0.1270). Measures from the qualitative analysis also indicate improvements in terms of high expert ratings, with improvements of >3% demonstrated when comparing the baseline model with the proposed model. This paper presents the first study to focus on darker skin tones for chronic wound segmentation using models trained only on wound images exhibiting lighter skin. Diabetes is highly prevalent in countries where patients have darker skin tones, highlighting the need for a greater focus on such cases. Additionally, we conduct the largest qualitative study to date for chronic wound segmentation. All source code for this study is available at: https://github.com/mmu-dermatology-research/hardnet-cws.

Authors

  • Bill Cassidy
    Faculty of Science and Engineering, Manchester Metropolitan University, John Dalton Building, Chester Street, Manchester, M1 5GD, UK.
  • Christian McBride
    Department of Computing and Mathematics, Manchester Metropolitan University, Dalton Building, Chester Street, Manchester, M1 5GD, UK.
  • Connah Kendrick
    Department of Computing and Mathematics, Manchester Metropolitan University, Dalton Building, Chester Street, Manchester, M1 5GD, UK.
  • Neil D Reeves
    Faculty of Science and Engineering, Manchester Metropolitan University, John Dalton Building, Chester Street, Manchester, M1 5GD, UK.
  • Joseph M Pappachan
    Lancashire Teaching Hospitals, Chorley, UK.
  • Cornelius J Fernandez
    United Lincolnshire Hospitals NHS Trust, Greetwell Road, Lincoln, LN2 5QY, UK.
  • Elias Chacko
    Jersey General Hospital, St Helier, JE1 3QS, Jersey.
  • Raphael Brungel
  • Christoph M Friedrich
    Department of Computer Science, University of Applied Sciences and Arts Dortmund, Dortmund, Germany.
  • Metib Alotaibi
    University Diabetes Center, King Saud University Medical City, Riyadh, Saudi Arabia.
  • Abdullah Abdulaziz AlWabel
    University Diabetes Center, King Saud University Medical City, Riyadh, Saudi Arabia.
  • Mohammad Alderwish
    University Diabetes Center, King Saud University Medical City, Riyadh, Saudi Arabia.
  • Kuan-Ying Lai
    Independent researcher, Taiwan.
  • Moi Hoon Yap