Graph neural network-based structural classification of glass-forming liquids and its interpretation via self-attention mechanism.

Allergy & Immunology Dermatology Hematology Oncology/Hematology Transplantation
Journal: The Journal of chemical physics
Published Date:

Abstract

Glass-forming liquids exhibit slow dynamics below their melting temperatures, maintaining an amorphous structure reminiscent of normal liquids. Distinguishing microscopic structures in the supercooled and high-temperature regimes remains a debated topic. Building on recent advances in machine learning, particularly Graph Neural Networks (GNNs), our study automatically extracts features, unveiling fundamental mechanisms driving structural changes at varying temperatures. We employ the self-attention mechanism to generate attention coefficients that quantify the importance of connections between graph nodes, providing insights into the rationale behind GNN predictions. By exploring structural changes with decreasing temperature through the GNN + self-attention using physically defined structural descriptors, including the bond-orientational order parameter, Voronoi cell volume, and coordination number, we identify strong correlations between high attention coefficients and more disordered structures as a key indicator of variations in glass-forming liquids.

Authors

  • Kohei Yoshikawa
    Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka, Toyonaka, Osaka 560-8531, Japan.
  • Kentaro Yano
    Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka, Toyonaka, Osaka 560-8531, Japan.
  • Shota Goto
    Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka, Toyonaka, Osaka 560-8531, Japan.
  • Kang Kim
    Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA, United States.
  • Nobuyuki Matubayasi
    Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan.

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