Prediction of Cerebrospinal Fluid (CSF) Pressure with Generative Adversarial Network Synthetic Plasma-CSF Biomarker Pairing.

Journal: Neuroinformatics
Published Date:

Abstract

Non-invasive intracranial pressure (ICP) monitoring can help clinicians safely and efficiently monitor spaceflight-associated neuro-ocular syndrome (SANS), idiopathic intracranial hypertension, and traumatic brain injury in astronauts. Current invasive ICP measurement techniques are unsuitable for austere environments like spaceflight. In this study, we explore the potential of plasma-derived cell-free RNA (cfRNA) biomarkers as non-invasive alternatives to cerebrospinal fluid (CSF) markers for ICP assessment. We conducted a secondary analysis of NASA's Open Science Data Repository datasets 363-364, focusing on plasma and CSF biomarkers related to ICP and neurovascular health. An ensemble model combining Support Vector Machine, Gradient Boosting Regressor, and Ridge Regression was developed to capture plasma-CSF biomarker relationships. To address limited sample size, we employed a Generative Adversarial Network (GAN) to generate synthetic plasma-CSF biomarker pairs, expanding the dataset from 29 to 279 samples. The model's performance was evaluated using Mean Squared Error (MSE) and validated against real biomarker data. The GAN-augmented ensemble model achieved high predictive accuracy with an MSE of 0.0044. Synthetic plasma-CSF pairs closely aligned with actual biomarker distributions, demonstrating their effectiveness in reducing overfitting and enhancing model robustness. Strong correlations between plasma-derived RNA biomarkers and corresponding CSF indicators support their potential as non-invasive proxies for ICP assessment. This study establishes a novel framework for non-invasive ICP monitoring using plasma cfRNA profiles enriched with GAN-generated synthetic data. The approach shows promise for both spaceflight and clinical applications, potentially broadening diagnostic capabilities for ICP-related conditions. However, further validation across diverse populations is necessary, along with careful consideration of bioethical and data security issues associated with synthetic data use in clinical diagnostics.

Authors

  • Phani Paladugu
    Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.
  • Rahul Kumar
  • Jahnavi Yelamanchi
    Tandon School of Engineering, New York University, New York, NY, USA.
  • Ethan Waisberg
    University College Dublin School of Medicine, Belfield, Dublin, Ireland. Electronic address: ethan.waisberg@ucdconnect.ie.
  • Joshua Ong
  • Mouayad Masalkhi
    University College Dublin School of Medicine, Belfield, Dublin 4, Ireland.
  • Chirag Gowda
    Miller School of Medicine, University of Miami, Miami, FL 33146, USA.
  • Ryung Lee
    Touro College of Osteopathic Medicine, New York, NY, USA.
  • Dylan Amiri
    Mecklenburg Neurology Group, Charlotte, NC, United States.
  • Ram Jagadeesan
    Whiting School of Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
  • Nasif Zaman
    Human-Machine Perception Laboratory, Department of Computer Science and Engineering, University of Nevada, Reno, Reno, Nevada, United States.
  • Alireza Tavakkoli
    Department of Computer Science and Engineering, University of Nevada School of Medicine, Reno, NV 89557, USA.
  • Andrew G Lee
    Center for Space Medicine, Baylor College of Medicine, Houston, Texas, United States; Department of Ophthalmology, Blanton Eye Institute, Houston Methodist Hospital, Houston, Texas, United States; The Houston Methodist Research Institute, Houston Methodist Hospital, Houston, Texas, United States; Departments of Ophthalmology, Neurology, and Neurosurgery, Weill Cornell Medicine, New York, New York, United States; Department of Ophthalmology, University of Texas Medical Branch, Galveston, Texas, United States; University of Texas MD Anderson Cancer Center, Houston, Texas, United States; Texas A&M College of Medicine, Texas, United States; Department of Ophthalmology, The University of Iowa Hospitals and Clinics, Iowa City, Iowa, United States.