Enhancing frozen histological section images using permanent-section-guided deep learning with nuclei attention.

Journal: Scientific reports
Published Date:

Abstract

In histological pathology, frozen sections are often used for rapid diagnosis during surgeries, as they can be produced within minutes. However, they suffer from artifacts and often lack crucial diagnostic details, particularly within the cell nuclei region. Permanent sections, on the other hand, contain more diagnostic detail but require a time-intensive preparation process. Here, we present a generative deep learning approach to enhance frozen section images by leveraging guidance from permanent sections. Our method places a strong emphasis on the nuclei region, which contains critical information in both frozen and permanent sections. Importantly, our approach avoids generating artificial data in blank regions, ensuring that the network only enhances existing features without introducing potentially unreliable information. We achieve this through a segmented attention network, incorporating nuclei-segmented images during training and adding an additional loss function to refine the nuclei details in the generated permanent images. We validated our method across various tissues, including kidney, breast, and colon. This approach significantly improves histological efficiency and diagnostic accuracy, enhancing frozen section images within seconds, and seamlessly integrating into existing laboratory workflows.

Authors

  • Elad Yoshai
    School of Biomedical Engineering, Tel Aviv University, Tel Aviv, Israel.
  • Gil Goldinger
    Institute of Pathology, Sheba Medical Center, Ramat Gan, Israel. Electronic address: Gil.Goldinger@sheba.health.gov.il.
  • Tatiana Kogan
    Meir Medical Center, Kfar Saba, Israel.
  • Anna Zakharov
    Meir Medical Center, Kfar Saba, Israel.
  • Miki Haifler
    Chaim Sheba Medical Center, Ramat Gan, Israel.
  • Natan T Shaked
    Tel Aviv University, Faculty of Engineering, Department of Biomedical Engineering, Tel Aviv 6997801, Israel.