Imidazolium ionic liquids as effective antiseptics and disinfectants against drug resistant S. aureus: In silico and in vitro studies.

Journal: Computational biology and chemistry
Published Date:

Abstract

This paper describes Quantitative Structure-Activity Relationships (QSAR) studies, molecular docking and in vitro antibacterial activity of several potent imidazolium-based ionic liquids (ILs) against S. aureus ATCC 25923 and its clinical isolate. Small set of 131 ILs was collected from the literature and uploaded in the OCHEM database. QSAR methodologies used Associative Neural Networks and Random Forests (WEKA-RF) methods. The predictive ability of the models was tested through cross-validation, giving cross-validated coefficients q = 0.82-0.87 for regression models and overall prediction accuracies of 80-82.1% for classification models. The proposed QSAR models are freely available online on OCHEM server at https://ochem.eu/article/107364 and can be used for estimation of antibacterial activity of new imidazolium-based ILs. A series of synthesized 1,3-dialkylimidazolium ILs with predicted activity were evaluated in vitro. The high activity of 7 ILs against S. aureus strain and its clinical isolate was measured and thereafter analyzed by the molecular docking to prokaryotic homologue of a eukaryotic tubulin FtsZ.

Authors

  • Diana Hodyna
    Department of Medical and Biological Researches, Institute of Bioorganic Chemistry and Petrochemistry, NAS of Ukraine, Kyiv-94, 02160, Ukraine. Electronic address: dianahodyna@gmail.com.
  • Vasyl Kovalishyn
    Department of Medical and Biological Researches, Institute of Bioorganic Chemistry and Petrochemistry, NAS of Ukraine, Kyiv-94, 02160, Ukraine.
  • Ivan Semenyuta
    Department of Medical and Biological Researches, Institute of Bioorganic Chemistry and Petrochemistry, NAS of Ukraine, Kyiv-94, 02160, Ukraine.
  • Volodymyr Blagodatnyi
    Department of Microbiology and Epidemiology, Shupyk National Medical Academy of Postgraduate Education, Kyiv 04112, Ukraine.
  • Sergiy Rogalsky
    Laboratory of Modification of Polymers, Institute of Bioorganic Chemistry and Petrochemistry, NAS of Ukraine, Kyiv 02160, Ukraine.
  • Larisa Metelytsia
    Department of Medical and Biological Researches, Institute of Bioorganic Chemistry and Petrochemistry, NAS of Ukraine, Kyiv-94, 02160, Ukraine.