Deep learning for molecular generation.

Journal: Future medicinal chemistry
Published Date:

Abstract

De novo drug design aims to generate novel chemical compounds with desirable chemical and pharmacological properties from scratch using computer-based methods. Recently, deep generative neural networks have become a very active research frontier in de novo drug discovery, both in theoretical and in experimental evidence, shedding light on a promising new direction of automatic molecular generation and optimization. In this review, we discussed recent development of deep learning models for molecular generation and summarized them as four different generative architectures with four different optimization strategies. We also discussed future directions of deep generative models for de novo drug design.

Authors

  • Youjun Xu
    Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, ‡Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, College of Chemistry and Molecular Engineering, and ¶Peking-Tsinghua Center for Life Sciences, Peking University , Beijing 100871, China.
  • Kangjie Lin
    BNLMS, State Key Laboratory for Structural Chemistry of Unstable & Stable Species, College of Chemistry & Molecular Engineering, Peking University, Beijing, 100871, PR China.
  • Shiwei Wang
    PTN Graduate Program, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, PR China.
  • Lei Wang
    Department of Nursing, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, Beijing, China.
  • Chenjing Cai
    Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, PR China.
  • Chen Song
    Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, PR China.
  • Luhua Lai
    Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.
  • Jianfeng Pei
    Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.