Prediction of tumor location in prostate cancer tissue using a machine learning system on gene expression data.

Journal: BMC bioinformatics
PMID:

Abstract

BACKGROUND: Finding the tumor location in the prostate is an essential pathological step for prostate cancer diagnosis and treatment. The location of the tumor - the laterality - can be unilateral (the tumor is affecting one side of the prostate), or bilateral on both sides. Nevertheless, the tumor can be overestimated or underestimated by standard screening methods. In this work, a combination of efficient machine learning methods for feature selection and classification are proposed to analyze gene activity and select them as relevant biomarkers for different laterality samples.

Authors

  • Osama Hamzeh
    School of Computer Science, University of Windsor, 401 Sunset Ave, Windsor, N9B 3P4, ON, Canada.
  • Abedalrhman Alkhateeb
    School of Computer Science, University of Windsor, 401 Sunset Ave, Windsor, N9B 3P4, ON, Canada. alkhate@uwindsor.ca.
  • Julia Zheng
    School of Computer Science, University of Windsor, 401 Sunset Ave, Windsor, N9B 3P4, ON, Canada.
  • Srinath Kandalam
    Department of Biomedical Sciences, University of Windsor, 401 Sunset Ave, Windsor, N9B 3P4, ON, Canada.
  • Luis Rueda
    School of Computer Science, University of Windsor, Windsor, Canada.